BAC Information

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BAC

Clone NameMSMg01-466H24
Chromosome6 (Build37)
Map Location 6,989,433 - 6,989,737
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc25a13, EG667462, EG667468, LOC667471, LOC100040096, Shfm1, LOC545826, Dlx6as, Dlx5, Acn9
Downstream geneEG667500, Tac1, LOC667511, Asns, EG667529, C1galt1, LOC100040661, Col28a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466H24.T7 (MSMg01no466_h24.b1)MSMg01-466H24.TJ (MSMg01no466_h24.g1)
ACCAG550432AG550433
length790825
length of high quality
(start - end)
387 (81 - 467)305 (78 - 382)
definitionCHROMAT_FILE: MSMg01no466_h24.b1 PHD_FILE: MSMg01no466_h24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:00 2005CHROMAT_FILE: MSMg01no466_h24.g1 PHD_FILE: MSMg01no466_h24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACGACAACCCG
CGGAATTCTCACCTGATGACCACAGCAATGGAGAGAAGCACCTGAAAAAA
TGTTCAACATCCTTAATCATCTGGGACATGCAAATCAAAACAACCCTGAG
ATTCCATCTCACACCAGCCCGAATGGCTAAGATTAAAAATTCAGGTGACA
ACAGATGCTGGCATGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGG
TGGCATTGCAAGCTTGTAAAACCACTCTGGAAATCAGTCTGGCGGTTCCT
TAGAAAATTGGACATAGTACTATCTGATTATCCAGCAATACCTCTCCTGG
GCATATATCCAGATGTCCCAACCGGTAAGAAGGACACATGCTTCACTATG
TTCATAGCAGCCTTATTCATAATAGCCAGAAGCTGGAAAGAACCCAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACCCAACGG
AGTATACTCAGCTTATACAAAGAATGAATCTATGAAAACTCCTAGGTAAA
TGTATGGACCTGGGAGGTTATCATCCTGAGCGGTGGTAACCCCATCTAAA
CTGAATTCCCCCTATATGTATCTCCCCGCAAAGGCGGAATTATCCCCCCA
ACTTTCGGTTCTCCCTAATATAAAAAAATTTTTGGCCTGACCTCTCGTGA
CTCCTTAATTAAATCATAAAATATATTGTTCCCCCTTTTGCCCCTTTCTT
TATATCCCGCTTTATTAACTCTCTTCTATTTAGTTCACTT
TTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAATAAGTTTGTTATTAGACATA
TTGTGATTCTGAAAGTCCCACCATTTCTCCTTTAGTAGTACACACCTGGC
TATCACTCAGAATTTCATCTATGAGTCACGTTGAAAGTTTTAAGAAAAGC
CTTAAGATTCAATTGTTAAGAATTTCAGTTATTGTCTAAAGGTTGGGGAG
ATGAAAAATACTAAGTTGGCTCATACATTTAAAAATAAATTATCTATCAA
AACCTGCATGTATGTTGGGTGACCTACTGGATACTGATGTGACACAATTT
TTGCCAGGGAGCTCGCTAAACTGGTAAAGTGTTTGCTGTGAGAGCATGAG
GACCGGAGTTCAGATTTTTAGTACCCACATAAAAAGCAGACCTGTAGATG
CATGCTTTTAATGAAAAAGCGAAAACGGGCCCTTCCCCTTGGGTCCACCA
TCCCTGGGATCTTTAAGCCTGTGAAGGCCTCGTTTCCCTAATAAACCTGG
CTCTTATCAGTATGCTCTTCCTTATTTCGATTAACTTGTCTCTACACGCT
CTTTTCCGTTTCCTATCTTTTATTCCAAATTAATTGTCTTTATATTCTTA
TCCTTTCTCTCATCTCTATCTTTTTTTTGTCTTTCTCCGTTCCTTCTTTT
TAAGTTTAGCTTTACTTTCTCCCTTTATTTTTTTATATCCCTCTCCCCCC
CTCCCTATTAATCGTCTCTCAATACTTCCTTTTACTTTTTATTTTTTTCT
TAAACCATCTAAACCCTTCTCCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_h24.g1 MSMg01no466_h24.g1 CHROMAT_FILE:
MSMg01no466_h24.g1 PHD_FILE: MSMg01no466_h24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:00 2005
         (305 letters)



>mm_chr6_6989233_6989937
          Length = 705

 Score =  567 bits (293), Expect = e-166
 Identities = 302/305 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caataagtttgttattagacatattgtgattctgaaagtcccaccatttctcctttagta 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caataagtttgctattagacatattgtgattctgaaagtcccaccatttctcctttagta 260

                                                                       
Query: 61  gtacacacctggctatcactcagaatttcatctatgagtcacgttgaaagttttaagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtacacacctggctatcactcagaatttcatctatgagtcacgttgaaagttttaagaaa 320

                                                                       
Query: 121 agccttaagattcaattgttaagaatttcagttattgtctaaaggttggggagatgaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccttaagattcaattgttaagaatttcagttattgtctaaaggttggggagatgaaaa 380

                                                                       
Query: 181 atactaagttggctcatacatttaaaaataaattatctatcaaaacctgcatgtatgttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atactaagttggctcatacatttaaaaataaattatctatcaaaacctgcatgtatgttg 440

                                                                       
Query: 241 ggtgacctactggatactgatgtgacacaatttttgccagggagctcgctaaactggtaa 300
           ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 441 ggtgacctactggatactgatgtgacacaatttttgccaggcagctcgctcaactggtaa 500

                
Query: 301 agtgt 305
           |||||
Sbjct: 501 agtgt 505


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)