BAC Information

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BAC

Clone NameMSMg01-466K06
Chromosome6 (Build37)
Map Location 23,680,199 - 23,680,445
singlet/doubletsinglet
Overlap geneCadps2
Upstream geneLOC668022, Ptprz1, Aass, EG668044, EG546894, EG668053, EG384356, Fezf1, Rnf133, Rnf148
Downstream geneTas2r118, LOC100041082, Slc13a1, LOC100041094, Iqub, Ndufa5, Asb15, EG626715, Lmod2, Wasl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466K06.T7 (MSMg01no466_k06.b1)MSMg01-466K06.TJ (MSMg01no466_k06.g1)
ACCAG550540AG550541
length761764
length of high quality
(start - end)
244 (78 - 321)435 (82 - 516)
definitionCHROMAT_FILE: MSMg01no466_k06.b1 PHD_FILE: MSMg01no466_k06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:12 2005CHROMAT_FILE: MSMg01no466_k06.g1 PHD_FILE: MSMg01no466_k06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCCCCATTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTGCCACTTGCTCAAGGACATTTCTAGAACTG
TTGGAACACTGGCAGAAGGCTTTAGCCATGTCAGAATTCAATTTAAAAAG
CACTTATAATAGGAAAATACTGAAAGAGAGCACGTGGATCCATACACTAG
ACTAACGTGGGAATGGAAAATTAATGTATGGGTAGGAAATGCTAGACTCC
AGGAGGAGAGCTTCCTTGAAACTCTTTTGCCTCATGAGTGAATTTTAAGC
CTTTCGGCTTGTCCAGCTGACTTTTACCGGAGAGCGTAGCACCAAACTAA
GACATCTTCTTTTCCTCTCTAAAAACAGGGTCAAAGAGGAGGAAGAAAAT
GAGAGGAGTTGAAAAATGAGAGAAAAAAGTAGGAAAAAGAGAAAGGTTGG
AAAGATATGAAGAAGACAATAGAAGGGTCACTGTGGGCATTCAGGCCTGA
GACTGAGGCACATGGGAGTGACCATCTAGAGAGACTGGTCTCACTTCTTT
TAGCACAGGAAGAAAGGCCTAGCAATTACCTGGGAATATAATATAAATTG
GCAAAAGTATAATTTGCTCTGTTTGAACAATTATGATCTTTGTTTTTTTA
TTTTAATATCATCATTTATGAGCCCGGTCTTTAACCTTCCCTTCCACAAG
CGATTTTGTCCGTTTGTCCCGGAAAATATTCCTTTCACACCTGTGTATAT
TGAGTTTTTTA
TAACCCACAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCACTTCTCCCTTTGTCAT
GGAGCCGACGGTTCTCTTTTTGTGGACAGTGTTGACTCTTTTCTGATGAC
TAGCCCAATCCCCAACAGCTTTGTCAGTATTCTCAGCCAGTTTTATTTTT
ATGCCAGCTGTCCTCAACCTGTGGGTTGCAACCCCTTTGGCAAACCTCTG
TCTCCAACATTGATGAGAACATGGATGCCTGGCACTGGGAGACAGCAGAA
CCATTAGGAACTCACGAATATTTTTCTGCTCAGGCTCTCCACAGAAGGAC
CATGAACTGACTTCTGTATCTGAGTTCCTCCTATAGCATCCACTTCACTG
ACCTGACAGCAACACAATGTTAGCTTTCAATCACCTCTTTATAATATTTC
TTTCATTAAAGTTTACCCACTGGTAAACATGCCATATCATTCATTCATAT
ATATATATGTGTGTGTGTGTGCTCCTCTAAACTCTTTTCCTCCTCTGTTT
CTTTTTTTATCTCTTATTTTATTCTTATGTTTTCCTTTCATTTCTTTTTT
TCACTTTACCCCTCTCCACTCCGCCCGATTCTTCCACCGTCTCATATTAT
TCCCTCCGTTTTATTTCATTGTATCACAATCTTGACCCCGCCCCGCAACA
AATACTACACGACTTTATTTGCTTCTATAGGTTTACCTTTATACATCCCT
TCATTATCTCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_k06.g1 MSMg01no466_k06.g1 CHROMAT_FILE:
MSMg01no466_k06.g1 PHD_FILE: MSMg01no466_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:12 2005
         (435 letters)



>mm_chr6_23679821_23680655
          Length = 835

 Score =  375 bits (194), Expect = e-108
 Identities = 235/256 (91%), Gaps = 16/256 (6%)
 Strand = Plus / Plus

                                                                       
Query: 179 ttgatgagaacatggatgcctggcactgggagacagcagaaccattaggaactcacgaat 238
           ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 379 ttgatgagaacatggatgcctggcactgggagacaacagaactattaggaactcacgaat 438

                                                                       
Query: 239 ----atttttctgctcaggctctccacagaaggaccatgaactgacttctgtatctgagt 294
               |     |||| |||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct: 439 aacaa-----ctgcccaggctctccacagaaggacaatgaactgacttctgtatctgaga 493

                                                                       
Query: 295 tcctcctatagcatccacttcactgacctgacagcaacacaatgttagctttcaatcacc 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tcctcctatagcatccacttcactgacctgacagcaacacaatgttagctttcaatcacc 553

                                                                       
Query: 355 tctttataatatttctttcattaaagtttacccactggtaa---acatgccatatcattc 411
           |||||||||||||||||||||||||||||||||||||||||   ||||||||||||  ||
Sbjct: 554 tctttataatatttctttcattaaagtttacccactggtaagttacatgccatatc--tc 611

                           
Query: 412 attcatatatatatat 427
             ||||||||||||||
Sbjct: 612 --tcatatatatatat 625



 Score =  300 bits (155), Expect = 1e-85
 Identities = 170/175 (97%)
 Strand = Plus / Plus

                                                                       
Query: 2   cacttctccctttgtcatggagccgacggttctctttttgtggacagtgttgactctttt 61
           ||||||||||||||||||||||| ||| ||||||||||| |||||| |||||||||||||
Sbjct: 1   cacttctccctttgtcatggagcagactgttctctttttttggacaatgttgactctttt 60

                                                                       
Query: 62  ctgatgactagcccaatccccaacagctttgtcagtattctcagccagttttatttttat 121
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ctgatgactagcccaagccccaacagctttgtcagtattctcagccagttttatttttat 120

                                                                  
Query: 122 gccagctgtcctcaacctgtgggttgcaacccctttggcaaacctctgtctccaa 176
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gccagctgtcctcaacctgtgggttgcaacccctttggcaaacctctgtctccaa 175


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)