BAC Information

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BAC

Clone NameMSMg01-466M14
Chromosome6 (Build37)
Map Location 60,937,872 - 60,938,091
singlet/doubletsinglet
Overlap geneMmrn1
Upstream geneEG434019, LOC671300, EG627178, LOC100041706, LOC100041717, A530053G22Rik, LOC667066, LOC100041726, Snca, ENSMUSG00000064018
Downstream geneLOC100041756, LOC100041764, C130092O11Rik, LOC100042694
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466M14.T7 (MSMg01no466_m14.b1)MSMg01-466M14.TJ (MSMg01no466_m14.g1)
ACCAG550651AG550652
length782781
length of high quality
(start - end)
239 (79 - 317)220 (326 - 545)
definitionCHROMAT_FILE: MSMg01no466_m14.b1 PHD_FILE: MSMg01no466_m14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:25 2005CHROMAT_FILE: MSMg01no466_m14.g1 PHD_FILE: MSMg01no466_m14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGGCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGGC
GCGGAATTCTCACCTTACCCAAACCGAATGGCAGAGAAGCACCTGAAAAA
ATGTTCAACATCCTTAATCATCAGGCAAATGCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGAC
AGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTG
GTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCC
TCAGAAAATTGGACATAGTACTTCCTTAGGATCCAGCAATACCTCTCCTC
GGCATTTATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCAC
TATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCA
GATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACA
ATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTACC
CCAATGGATGGACCTGGAAGGGCATCATCCCTGAGTGGAGGAACTCCTTT
CCAAAGGGACTTCACCCCATATGTACTCCCTTGATAAGGGGAAATATACC
CTCCCTCCTTAGAATTCCTCGGAAATTAAGGACCATTTTTGTTTATCCCT
TTGGATTTTCTCAAAATAATTATCGTGGTGGGGGTACTTTGTCCCCCTCC
CTTATAAATGGGATAACAACACCCAATCGTGG
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAACTTGCCAGTCCTTGGGTT
ATATGAGGCCCCATAGTTGACGCTTAGATCATTGAACAGGATAGGACCAG
GTGCCGTCATTCCGTGAGTGTGAGATACGAAAAACGCCACCATCGGAGCA
TATCTGTAAGATCCTTTGGAAAAATCTGTTCAAGGAAAAATGTGACAGGA
TTTATTTTTCAGGGTTTTTATCTTGTTTTTCTTCCTATAGCTCTCATTTT
ATCTCAGTCTCACAGATTTTGCTTAAACATAAAGCTCTCTATCAAACTGA
GTGATGCCCCTGTATCTGGATGTCTGCCTCCACTCTAGGCTAAATGTGGA
AACACCAAGTCTCCCGAAGCCTCAGTTTCTCCACTGAGATAAGGGTCTAT
TGTGACATCTGGCAACTGTCCTGCAGAAATGCCTGCAAGGCCATTCGCAT
GCTGCATCACACTGCCAAGAGATAAAGAAATTCAAAGTACTGAACAATTA
CTATTGTGATGTGCGAAACTCCCTGCAGGAACGGAAACCTCTAGGATGGG
GGAGACCAGGGTTTCCTGATAATTTCTTAGTGGCCTGAAAATTGAATTTT
TTTTGTATTCCCAGCTTCCCCCCGTGAGAAATCTAGTCCTCGGGTAAGTT
TTCCTATGTCCTAAACGGCCCCTCTACTCCCTTTTTCTCAAATTTTCAAC
TGGGGTGTGGAACCGTGTCTCTCTTCAAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_m14.g1 MSMg01no466_m14.g1 CHROMAT_FILE:
MSMg01no466_m14.g1 PHD_FILE: MSMg01no466_m14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:25 2005
         (220 letters)



>mm_chr6_60937672_60938291
          Length = 620

 Score =  402 bits (208), Expect = e-117
 Identities = 217/220 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacataaagctctctatcaaactgagtgatgcccctgtatctggatgtctgcctccactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 420 aacataaagctctctatcaaactgagtgatgcccctgtatctggatgtctgcctccactg 361

                                                                       
Query: 61  taggctaaatgtggaaacaccaagtctcccgaagcctcagtttctccactgagataaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 taggctaaatgtggaaacaccaagtctcccgaagcctcagtttctccactgagataaggg 301

                                                                       
Query: 121 tctattgtgacatctggcaactgtcctgcagaaatgcctgcaaggccattcgcatgctgc 180
           |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 300 tctattgtgacatctggcaactgtcctgtagaaatgcctgcaaggtcattcgcatgctgc 241

                                                   
Query: 181 atcacactgccaagagataaagaaattcaaagtactgaac 220
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 atcacactgccaagagataaagaaattcaaagtactgaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 620
Length adjustment: 9
Effective length of query: 211
Effective length of database: 611
Effective search space:   128921
Effective search space used:   128921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)