Query= MSMg01no467_a13.b1 MSMg01no467_a13.b1 CHROMAT_FILE:
MSMg01no467_a13.b1 PHD_FILE: MSMg01no467_a13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:46 2005
(589 letters)
>mm_chr6_9373573_9374561
Length = 989
Score = 1100 bits (569), Expect = 0.0
Identities = 580/585 (99%), Gaps = 3/585 (0%)
Strand = Plus / Plus
Query: 5 gaattctttaatttgctttatctaaatggggtggaaatagggcaaaattaaatttagaaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttaatttgctttatctaaatggggtggaaatagggcaaaattaaatttagaaa 264
Query: 65 aaaataatgagaacaatttcatattattaagattatcaaccacactccagtgtttgagaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaataatgagaacaatttcatattattaagattatcaaccacactccagtgtttgagaa 324
Query: 125 aattaatttggtggattaaaaaatgccagctcataaaaattaacacttcacctcatgcaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aattaatttggtggattaaaaaatgccagctcataaaaattaacacttcacctcatgcaa 384
Query: 185 ttcagtgtatagaagaaatttatggcttgtcacagcaatatgtagggtacatatattcaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcagtgtatagaagaaatttatggcttgtcacagcaatatgtagggtacatatattcaa 444
Query: 245 ggatatgttcctccattttcagaggcacatcacaggcactgctaatgtagttctcttttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atatatgttcctccattttcagaggcacatcacaggcactgctaatgtagttctcttttt 504
Query: 305 gatgatgtcatgtcagattactataaactcagagtacccttgtgtaagccaggagacaag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gatgatgtcatgtcagattactataaactcagagtacccttgtgtaagccaggagacaag 564
Query: 365 ctaaagtgagacatgaaatgaggtagcacaaaaagactagcatgtgttagttcagactca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctaaagtgagacatgaaatgaggtagcacaaaaagactagcatgtgttagttcagactca 624
Query: 425 tctcacacagggtatttcttcagtctggaagtctaattcctatgaatcatttagaatggc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tctcacacagggtatttcttcagtctggaagtctaattcctatgaatcatttagaatggc 684
Query: 485 cttcttctgcatttttgagtcttccctgtcttggacagtggtctaagcttcacaacaaca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cttcttctgcatttttgagtcttccctgtcttggacagtggtctaagcttcacaacaaca 744
Query: 545 acaacaacaacaacacaataaaatatctgtgtattttttgttgct 589
|||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 745 acaacaacaaca---caataaaatatctgtgtattttttgttgct 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no467_a13.g1 MSMg01no467_a13.g1 CHROMAT_FILE:
MSMg01no467_a13.g1 PHD_FILE: MSMg01no467_a13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:46 2005
(522 letters)
>mm_chr6_9571591_9572512
Length = 922
Score = 926 bits (479), Expect = 0.0
Identities = 513/525 (97%), Gaps = 4/525 (0%)
Strand = Plus / Minus
Query: 1 tcttcaaaggaaaaatagacagacattttcagaagatacctttataaagcatgtgttttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tcttcaaaggaaaaatagacagacattttcagaagatacctttataaagcatgtgttttt 555
Query: 61 gtatacttttattacccattaaaacatttcaaattaggaaagagtgatatcttgagactg 120
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 554 gtatacttttattaccaattaaaacatttcaaattaggaaagaatgatatcttgagactg 495
Query: 121 gtgctggcagcaaaggctttagaattggcgaggtagggaatctgagtatttaagaccaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gtgctggcagcaaaggctttagaattggcgaggtagggaatctgagtatttaagaccaag 435
Query: 181 gactatatgtctaatcagtcttcaaaacaaagatattttacttgtagacactaggctaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gactatatgtctaatcagtcttcaaaacaaagatattttacttgtagacactaggctaaa 375
Query: 241 ataagtataaacccatgtagaaatgctttcagatttagtttgttagtcagtttctcaatg 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 374 ataagtataaacccatgtagaaatgctttcagatttagtttgttagtcagcttctcattg 315
Query: 301 atgatcaacataagcagcatgagcaatgtgagaaaccaatataaaaaagaagtttcattc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 atgatcaacataagcagcatgagcaatgtgagaaaccaatataaaaaagaagtttcattc 255
Query: 361 tgtgtcaagaatgtagacatttcatattcgtaatcaacaagccttattga-ttttattag 419
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 254 tgtgtcaagaatgtagacgtttcatattcgtaatcaacaagccttattgatttttattgg 195
Query: 420 ttttaattaattttttattaagtattttcttcatttacatttccagtgctatcccaaaag 479
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 194 ttttaatt-attttttattaggtattttcttcatttacatttccagtgctatcccaaaag 136
Query: 480 tcccccataccct--ccccccccactccccaaaccacccactccc 522
||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 135 tcccccataccctccccccccccactccccaacccacccactccc 91
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
