BAC Information

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BAC

Clone NameMSMg01-467G11
Chromosome6 (Build37)
Map Location 141,823,138 - 141,823,449
singlet/doubletsinglet
Overlap geneEG664913
Upstream geneLOC664875, Pde3a, Slco1c1, Slco1b2, EG435927, Slco1a4, LOC100042750
Downstream geneSlco1a1, EG625716, Slco1a6, Slco1a5, Iapp, BC027061, Recql, Golt1b, B230216G23Rik, Gys2, Ldhb, Kcnj8, Abcc9, 5330439B14Rik, Cmas, Gm766, EG665037, St8sia1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467G11.T7 (MSMg01no467_g11.b1)MSMg01-467G11.TJ (MSMg01no467_g11.g1)
ACCAG551121AG551122
length722748
length of high quality
(start - end)
312 (316 - 627)437 (74 - 510)
definitionCHROMAT_FILE: MSMg01no467_g11.b1 PHD_FILE: MSMg01no467_g11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:15 2005CHROMAT_FILE: MSMg01no467_g11.g1 PHD_FILE: MSMg01no467_g11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATAATTTGCGGCGCTAAACGACTCCTAAATCGAGAGACACCGCGGAATCA
ATTTATATCATGATATGGCTACAAGTCTATGGGGGCCAGGTAGTGAAGTG
TGGTGGTTTGAATACAAATAGCTCCCATAGACTCAAGTCTTTGAAAGTTT
GGCCCAAAGGGAGTGGCACTATCAGGAGGTGTGGCCTTGTTGGAGGAAGT
ATGTTACTTAGTCTGGGGGGTGGATTTTTAGGTCTGATGTGCTCAAGCTA
TGCTAAGTGCAGCATTCACTTCTACTGCTTGCAGATCAAGATGCAGAACT
CTCAGCTTCCTCNCTAGTACCATACCTGCCTGCATAACAGCATGCTTCCC
ACCATGAAGATAACGGACTCAATCTCTGAAAGTGTCAACCAGCCCTAATT
AAATGTTTTGCTTCATAAGACTTTCTTTGGTCATGTTGCCTCTTCCCAGC
AATAGAAATCACAATGAAGACACATACAGAAGATATCTTCAATTAATGCT
GTCATGACTCCCACAAAAATCTTAGTCTCCATTTTGCAAATCACTTTGAC
ATCTGCAACAGATCTGCAACCCCAGACAGATGCTGGTAGATTGTCGAAAT
GTCAAGCTTGTAGTCCCCTTTGCATTGGCAAGTCAAGAGCTGATATTTTT
CCAAGGGGAGTTAACGAAACTGTGAGTACCTGTTATACAACCTTTATATG
GATTTTCTGTTACTTTCTACCN
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATC
TGTCTGGCGGTTCTTCAGAAAATTGGACATAGAACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATACCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAACAAGAATGAATTT
ATGAAATTCCTTAGCCAATGGATGGACCTGGAGGGCTTCACCCTGAGGGA
GGTAACACCTTTCTCAAGGAACCTCCACCATAAGGGATTCCCTGATAAAG
GGGAGATAACCCCCCAAACTTAGGTAATCCCCGAAATTAAAACCAATTTT
TCTTTACTCTTGAGAATTTTTAGAAATATGAAACTTATCATTTGGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_g11.b1 MSMg01no467_g11.b1 CHROMAT_FILE:
MSMg01no467_g11.b1 PHD_FILE: MSMg01no467_g11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:15 2005
         (312 letters)



>mm_chr6_141822938_141823649
          Length = 712

 Score =  603 bits (312), Expect = e-177
 Identities = 312/312 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtaccatacctgcctgcataacagcatgcttcccaccatgaagataacggactcaatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtaccatacctgcctgcataacagcatgcttcccaccatgaagataacggactcaatct 260

                                                                       
Query: 61  ctgaaagtgtcaaccagccctaattaaatgttttgcttcataagactttctttggtcatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgaaagtgtcaaccagccctaattaaatgttttgcttcataagactttctttggtcatg 320

                                                                       
Query: 121 ttgcctcttcccagcaatagaaatcacaatgaagacacatacagaagatatcttcaatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgcctcttcccagcaatagaaatcacaatgaagacacatacagaagatatcttcaatta 380

                                                                       
Query: 181 atgctgtcatgactcccacaaaaatcttagtctccattttgcaaatcactttgacatctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgctgtcatgactcccacaaaaatcttagtctccattttgcaaatcactttgacatctg 440

                                                                       
Query: 241 caacagatctgcaaccccagacagatgctggtagattgtcgaaatgtcaagcttgtagtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caacagatctgcaaccccagacagatgctggtagattgtcgaaatgtcaagcttgtagtc 500

                       
Query: 301 ccctttgcattg 312
           ||||||||||||
Sbjct: 501 ccctttgcattg 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)