BAC Information

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BAC

Clone NameMSMg01-467K16
Chromosome6 (Build37)
Map Location 49,636,151 - 49,636,607
singlet/doubletsinglet
Overlap genenone
Upstream geneGimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210
Downstream geneNpy, LOC100041653, LOC624524, Mpp6, Dfna5h, LOC100041681, Osbpl3, Cycs, 4921507P07Rik, LOC213320, EG666302, EG666308, EG666310, Npvf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467K16.T7 (MSMg01no467_k16.b1)MSMg01-467K16.TJ (MSMg01no467_k16.g1)
ACCAG551320AG551321
length731721
length of high quality
(start - end)
458 (69 - 526)541 (71 - 611)
definitionCHROMAT_FILE: MSMg01no467_k16.b1 PHD_FILE: MSMg01no467_k16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:36 2005CHROMAT_FILE: MSMg01no467_k16.g1 PHD_FILE: MSMg01no467_k16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGCAGTCTCGCCGGTCAGGGAAATGGGAATTAAAACCACGTTGATATTGC
ATCTCTCTCCTATCAGAATGGACATCATGAAGAAGGCAAGAGAGAGCAGC
TGCTGTTAAGGATGTTGGGAAAGAGGACCTTTGCTGTGGTAAGATAAGCT
GATGCAACCCTGTGGGGATCAAGTTGGAGGCATCTGAAAATAGGATTCCT
CTGTGATCTCGCTTGAGTACCTCAAAGGACAAGAGTTACCATAGAGACTT
GCACATCGATCTGTTTTGCTGCACTAGTCATAGAACCTAGGAAATACAGG
TCCAAAGCCATAGAGCAGAGTGACCAAGACTGGAGACAGTTAAAGGCGAG
AGCTAACATAAATCTTTCTTCCTTTAAACTATTTTCATCGGAGCAATAGA
AAGTTGAAGAGCACAGGATTGAGTCCCCAGAGCAGCTCAGCGTTGTAGCT
CCAGCCCTTGGTACCACGGATGGGAAAGAGAGATGGCTTGGCCAGGCTCT
CTGACTGAAACAGCAGTTCAAGTTGCTGCCTAAGCTGGGTTTTATGCCCG
GAACTTTCCCCAGTCCCCCATTCTGCCTTTGCTTCAGTTCTGGCCCCCAA
CCCCACCCACATGGCCCCATGGTCACTTCCCAAAGCTTTTGGCAGTCTAT
TCAGGAACCTTATGCCCTTCCAACTTGATCN
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAG
CACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAGATCAGT
CTGGCGGTTCCTTTTAAAACTGGATATAGTACTACCGGAGGATCCAGCAA
TACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGAC
ACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTG
GAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGATGTGGT
ACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATG
AAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGT
AACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAATTGGAT
ATTAGCCCAAAACCTAAGATACTCAAGATATAAGATACAATTTCCTAAAC
ACATGAAAACTCCAGAAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_k16.b1 MSMg01no467_k16.b1 CHROMAT_FILE:
MSMg01no467_k16.b1 PHD_FILE: MSMg01no467_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:36 2005
         (458 letters)



>mm_chr6_49635950_49636807
          Length = 858

 Score =  832 bits (430), Expect = 0.0
 Identities = 451/458 (98%), Gaps = 1/458 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaaatgggaattaaaaccacgttgatattgcatctctctcctatcagaatggacatcat 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaaatgggaattaaaaccactttgatattgcatctctctcctatcagaatggacatcat 261

                                                                       
Query: 61  gaagaaggcaagagagagcagctgctgttaaggatgttgggaaagaggacctttgctgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gaagaaggcaagagagagcagctgctgttaaggatgttgggaaagaggacctttgctgtg 321

                                                                       
Query: 121 gtaagataagctgatgcaaccctgtggggatcaagttggaggcatctgaaaataggattc 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 322 gtaagataagctgatgcaaccctgtgggg-tcaagttggaggcatctgaaaataggattc 380

                                                                       
Query: 181 ctctgtgatctcgcttgagtacctcaaaggacaagagttaccatagagacttgcacatcg 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctgtgacctcgcttgagtacctcaaaggacaagagttaccatagagacttgcacatcg 440

                                                                       
Query: 241 atctgttttgctgcactagtcatagaacctaggaaatacaggtccaaagccatagagcag 300
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctgaattgctgcactagtcatagaacctaggaaatacaggtccaaagccatagagcag 500

                                                                       
Query: 301 agtgaccaagactggagacagttaaaggcgagagctaacataaatctttcttcctttaaa 360
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtgaccaagactggagatagttaaaggcgagagctaacataaatctttcttcctttaaa 560

                                                                       
Query: 361 ctattttcatcggagcaatagaaagttgaagagcacaggattgagtccccagagcagctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctattttcatcggagcaatagaaagttgaagagcacaggattgagtccccagagcagctc 620

                                                 
Query: 421 agcgttgtagctccagcccttggtaccacggatgggaa 458
           ||||||||||||||||||||||||||||| ||||||||
Sbjct: 621 agcgttgtagctccagcccttggtaccacagatgggaa 658


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)