BAC Information

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BAC

Clone NameMSMg01-468D22
Chromosome6 (Build37)
Map Location 30,478,717 - 30,479,124
singlet/doubletsinglet
Overlap genenone
Upstream geneIrf5, Tnpo3, Tspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik
Downstream geneCpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2, Copg2, Tsga13, Klf14, LOC100038973, AB041803, Mkln1, Podxl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468D22.T7 (MSMg01no468_d22.b1)MSMg01-468D22.TJ (MSMg01no468_d22.g1)
ACCAG551762AG551763
length861788
length of high quality
(start - end)		239 (72 - 310)408 (78 - 485)
definitionCHROMAT_FILE: MSMg01no468_d22.b1 PHD_FILE: MSMg01no468_d22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:23 2005CHROMAT_FILE: MSMg01no468_d22.g1 PHD_FILE: MSMg01no468_d22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGCGATTGTGTGACATTCCGAATTCTGGGGACGTTTTAGAGGGTATATAA
GTGTGAGGGCCCCAAGAGGCAGGGTTGGTGGTCAGGGGTTGGCTGCAGTT
TGTTAGTAGTTGTGATCTAAGAAGAAACAAAAGGAAAGACATTAGATTCA
GGGACCTCTCTCTCTCTCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCCCTTCACAGGTGTGTGTGTGTGTGGGGG
GGTGTTAAAGNNNTTTTATTANTATTTTTTTTTTTTTAATAATATATTTA
TTTTTTTANTTATTTATTTTTTTATGTTATTATTAAATATTTTTTAAGTT
TTTTTTGTTTTTATATTTTGTTTTTACTGAATTTGTTGTTGATTTGAGTG
ATTTTGTTGTTTATTTTTGTATTTATTTATGTTAATGTTTTTATGTGTTT
TTGTTTTTGTATTTATATATATTTTATGTATTTTGTATTGTTTGTTGAAT
GATTTTTTTTGATGTTGTATATTTATTGTTTTATTTAGTNGTTTTTTAAT
ATGATTATATATTGAGAGGAGGTGAGTTTTTATAGTTTACCGTGTATCCC
CTCATGGATACCTTCGCTTTCTCTTCATCCTTCTTCTTCTGTATTCTACT
ATATACTGTATTCTACTCTTTCATTTCTGTTCTGTTATTAATCCTTGTTA
CTCCTCAACAATTCTCGCTATTTTGCTTGTTTTACCCTACTTCCCGCGTT
TTCTATCTTCGATAAGACTCCTTATCTTCTATCTCACCATATATATACTC
TCTACCTTTCN

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGAGAAGCTATCAGCATGTGTC
CTTGAACCTCTTATGGAGTTGAGCAGCATATTGTATGCTGTATTCATTTT
ACCGGGGGATGTGCCAGAGCCAATATTCTCATCCTGTCTCAACTCCCACT
CAGCAATAGCATCTTGGCAGCTGTGAGATCAGCAACAGTTCGGGTATCTA
CACCGGAAAAACCAAAGTGCTACACAGTCAGGCTAACACTCTGAGCGCTG
TCCAGCATTCCAGCACACCTCGGGTGTGTGTATTCTTTTGGTTTCTAGTG
ACAGTGACCCACTTGAGCATGAGTAGAAGGACAAAGTTATCACGAGATCC
TGCCGGGGAGGCACAACGTTATTGATGAGTGGGTGAAAGAGAGGCCTTGG
AAAGAAGCTGGAACTGGGGGTAGGGGGTAGTTTGGNNNTNNNNNNNTNNN
NNTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TNTTTTTTCCTTTTTCTNTTTTTTTTTTTTTTTTTCTTTCCCTTCCCCTT
CCTTTCTTTTTTTGTCTTTCCCCCTTTCCTTTTCTTCTCCTTTTTTTTTC
GTCTTCCTCTTTCCTCTCTTTCCCTTCTTTTTCTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_d22.g1 MSMg01no468_d22.g1 CHROMAT_FILE:
MSMg01no468_d22.g1 PHD_FILE: MSMg01no468_d22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:23 2005
         (408 letters)



>mm_chr6_30478517_30479324
          Length = 808

 Score =  766 bits (396), Expect = 0.0
 Identities = 405/408 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgagaagctatcagcatgtgtccttgaacctcttatggagttgagcagcatattgtatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ctgagaagctatcagcatgtgtccttgaacctcttatggagttgagcagcatattgtatg 549

                                                                       
Query: 61  ctgtattcattttaccgggggatgtgccagagccaatattctcatcctgtctcaactccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ctgtattcattttaccgggggatgtgccagagccaatattctcatcctgtctcaactccc 489

                                                                       
Query: 121 actcagcaatagcatcttggcagctgtgagatcagcaacagttcgggtatctacaccgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 actcagcaatagcatcttggcagctgtgagatcagcaacagttcgggtatctacaccgga 429

                                                                       
Query: 181 aaaaccaaagtgctacacagtcaggctaacactctgagcgctgtccagcattccagcaca 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 428 aaaaccaaagtgctacacagtcaggctaacactctgagcgctgtcaagcattccagcaca 369

                                                                       
Query: 241 cctcgggtgtgtgtattcttttggtttctagtgacagtgacccacttgagcatgagtaga 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cctcgggtgtgtggattcttttggtttctagtgacagtgacccacttgagcatgagtaga 309

                                                                       
Query: 301 aggacaaagttatcacgagatcctgccggggaggcacaacgttattgatgagtgggtgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aggacaaagttatcacgagatcctgccggggaggcacaacgttattgatgagtgggtgaa 249

                                                           
Query: 361 agagaggccttggaaagaagctggaactgggggtagggggtagtttgg 408
           ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 248 agagaggccttggaaaggagctggaactgggggtagggggtagtttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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