BAC Information

Click to search

BAC

Clone NameMSMg01-468H24
Chromosome6 (Build37)
Map Location 50,571,711 - 50,572,217
singlet/doubletsinglet
Overlap geneEG666308
Upstream geneNpy, LOC100041653, LOC624524, Mpp6, Dfna5h, LOC100041681, Osbpl3, Cycs, 4921507P07Rik, LOC213320, EG666302
Downstream geneEG666310, Npvf, LOC100040877, EG625167, Nfe2l3, Hnrpa2b1, Cbx3, Snx10, LOC100041820
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468H24.T7 (MSMg01no468_h24.b1)MSMg01-468H24.TJ (MSMg01no468_h24.g1)
ACCAG551957AG551958
length814771
length of high quality
(start - end)
318 (72 - 389)525 (76 - 600)
definitionCHROMAT_FILE: MSMg01no468_h24.b1 PHD_FILE: MSMg01no468_h24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:44 2005CHROMAT_FILE: MSMg01no468_h24.g1 PHD_FILE: MSMg01no468_h24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:44 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NTGCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGACAACCGC
GGAATTCTGGGGTATTTCCCCTTTATCTTGTTCCATCTCTAGGGACATTC
CATTACACAGGCATGGGTGCTGGAAACTTGCTGGAGAGGTCTGGAAACTG
CTGCTTTGTCCTTGCCTCAGGCCAGGTGGCAGGGCATCTTCTGAGGCCTG
GACTTGCCTGGACTTACCCAGTTGTTAGAAACAGAGACTTAGGCCTCATC
TTCTGAACTGCCAGTTTGAAGCCTGCCATGGAGTCAGCCCAGACTTCTCA
GTCCTTAGCTGCCTTAGTCGTTTGTCCTATGTCCCCTATGTCATTACAAC
TGGCTTCTCTCCGAGGAAATGGGGGTGGGGGTGGTGGCAGATGTAAAAAA
TTTTTTATTTTTTTATATCACTTCATCTTATTTTTTTCTCTTCCCCTTCT
ACCCACTCTTTTCTCTCCTCTTTTTTCCTATCTCCTCTTACCTTTTATTC
TCCCTTTTATTTTCTCTTCCTTTTCACTCTTTCTTTTTCTCTTTTCCATT
CCCTATCTCTTATCTCCAACCCATCTTTACTCTCTACTTAAATACTTCCT
TTTTCTTTCTTTTATTCCTCTCTTCCTTTTCTCTCCCCTCTATTTCTTTT
TTCTATCTTCTCCATTCGCCCTCCTCCTATGCCTCATCATTATATTTCCA
CCTGTACTCCCACTCTTACTTATCACCCCTTCTTCTTCTACTTTTCATAC
TATCCCTCTATCCTTTAATATTACTTATTTATTTGCCATCCCTATATTAT
ACACTTTATAATCT
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTCTGCGTCTGTGATCTTCTGCTGA
GGTGGAGGCGCGAGGAGCTCGAGTTCTCTCTCTTTAGCTTCCCTTAAGAG
CTGCTCTGCAGTTATCTGCACCTCGGCCGCAGCTTTGTTTTTGACCTGGG
CCACTTTAGGAAGGCGCTGCTCTTTCTTGGCCACGGTGGATGACGCCATG
ACTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAC
AGCAGCGGAACGCAGCAGCAGAGGATTTCATCAAGTCCCAGGATCTAGTC
GTTGCTCACACAAACCAGGTGGTCCCAACTAGGCTGGTTGTTTCAGCTGG
CTCTCTGTAGAAGTCCTTTCCAACAGCAGTCCTGGCAAGGAAATGCAAGC
AGGTGAAGCACAGTGAAGTGCCCTTCTTCTGCTGGCCTTATATTGCTCTC
CAGCAGAGGGCGTGGCCAGGATTAAGGGTGTGTCCCACCCACCACGCCTG
GATCTGGGATTTGTTGATCCCAGGATGACCTTGAACTCACTCCGTTATCT
CCAGGCCTTAATCTCCTGAGAGCAAAGGTGTGGACGACCTTGCTTGGGCC
TAATCTCCATACCTAGATCCAGATCTGGAACCTTTGGTCTTTTCATTAAA
GAACTGGAACAAAAGGGACCCCCTCCCATTCTTGGACTGTGTGTTCACCC
CTAAATAATCCCCCTTGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_h24.g1 MSMg01no468_h24.g1 CHROMAT_FILE:
MSMg01no468_h24.g1 PHD_FILE: MSMg01no468_h24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:44 2005
         (525 letters)



>mm_chr6_50571511_50572435
          Length = 925

 Score =  868 bits (449), Expect = 0.0
 Identities = 496/517 (95%), Gaps = 10/517 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctgcgtctgtgatcttctgctgaggtggaggcgcgaggagctcgagttctctctcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctgcgtctgtgatcttctgctgaggtggaggcgcgaggagctcgagttctctctcttt 260

                                                                       
Query: 61  agcttcccttaagagctgctctgcagttatctgcacctcggccgcagctttgtttttgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcttcccttaagagctgctctgcagttatctgcacctcggccgcagctttgtttttgac 320

                                                                       
Query: 121 ctgggccactttaggaaggcgctgctctttcttggccacggtggatgacgccatgactgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgggccactttaggaaggcgctgctctttcttggccacggtggatgacgccatgactgc 380

                                                                       
Query: 181 agcagcagcagcagcagcagcagcagcagcagcagcagcagcaacagcagcggaacgcag 240
           |||||||||||||||||||||||||||||||||||||||||   |||||       ||||
Sbjct: 381 agcagcagcagcagcagcagcagcagcagcagcagcagcag---cagca-------gcag 430

                                                                       
Query: 241 cagcagaggatttcatcaagtcccaggatctagtcgttgctcacacaaaccaggtggtcc 300
           |||||| |||   || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 cagcaggggaacgcagcgagtcccaggatctagtcgttgctcacacaaaccaggtggtcc 490

                                                                       
Query: 301 caactaggctggttgtttcagctggctctctgtagaagtcctttccaacagcagtcctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| 
Sbjct: 491 caactaggctggttgtttcagctggctctctgtagaagtcctttccaacagcagtgctga 550

                                                                       
Query: 361 caaggaaatgcaagcaggtgaagcacagtgaagtgcccttcttctgctggccttatattg 420
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 551 caaggaaatgcaagcaggtgaagtgcagtgaagtgcccttcttctgctggccttatattg 610

                                                                       
Query: 421 ctctccagcagagggcgtggccaggattaagggtgtgtcccacccaccacgcctggatct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ctctccagcagagggcgtggccaggattaagggtgtgtcccacccaccacgcctggatct 670

                                                
Query: 481 gggatttgttgatcccaggatgaccttgaactcactc 517
           |||| ||||||||||||||||||||||||||||||||
Sbjct: 671 gggacttgttgatcccaggatgaccttgaactcactc 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)