BAC Information

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BAC

Clone NameMSMg01-468J01
Chromosome6 (Build37)
Map Location 12,999,828 - 13,000,304
singlet/doubletsinglet
Overlap genenone
Upstream geneEG625347, LOC435879, Thsd7a, LOC667735
Downstream geneLOC384350, Tmem106b, Gm467, Gm725, 1700016P04Rik, LOC100040478, Tmem168, B630005N14Rik, Gpr85, 2610001J05Rik, LOC100041043
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468J01.T7 (MSMg01no468_j01.b1)MSMg01-468J01.TJ (MSMg01no468_j01.g1)
ACCAG552007AG552008
length768765
length of high quality
(start - end)
477 (77 - 553)363 (268 - 630)
definitionCHROMAT_FILE: MSMg01no468_j01.b1 PHD_FILE: MSMg01no468_j01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:49 2005CHROMAT_FILE: MSMg01no468_j01.g1 PHD_FILE: MSMg01no468_j01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCGAGGATCC
GCGGAATTCCAGGTATCTTTACCAAGCATGTTGAAAAGGCTCAAGCGAGG
AATCATACAGTGGTCAGGGAAGAAATGGGGCTAGTTCTGGGTTTTTGCAA
GTTATACTTATTACAACACAAGGCTGATAGAAAACTGACTACATTACTTT
TGACCTATAAAGAACACAATTTAGCTCCATTAATAGAATATGAAGGATCC
CACAAAATGATGAGTGTTGATACACAGAGTAATACTCTGAACTCCTAAAA
ACGTCAAATGATGGATGTTCTGTTTAGCAGGAGAGTTGGCAGACATCTCA
GCCCATCTCTGTGAAGAATAGGGCAACTCCACGCAACCTCATAATAGAAT
GGCATTCTCTCTCAGCTAAATTTTCTCCCATGAGGCTCTTCCCTTTATTC
ACAGACCAGAAAGGAACAGGTCATAGTCAACCACAGTCCAGGAAATACCA
AGTACTCCTCACTCTCTGGCCATAGTTAACGGTATATGAAATATGTTTGT
GAATGTAGCTAAAGTCCATCTCGTTTCATCATGGTTGCAAGTTTGGATTA
AGACGTAACAACTGACCCTCTCAGTCCCTTACTAGGTTAGATGGGGGCGG
AATGTGGTTCTTTTTTGCCCTTTCCTCTGGGGTCCGTTCATTTCTTCCTA
CTCTCCTCCCACTTCTTTTTTTTTACCCACTATCCATCTCTGTTTCTTCT
CGCCTGTCTTCCTTTATN
CCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTAGGAATGCAGTAAGAAGTTTACC
TATTCAGTAACATTCAAATTTTCTTCTCGTAGAGATGGTGAAACTAATTA
GGCATTACAAAGAACGAGCCGGAATAGCTCAAGGTGGGGGTCTGCAGAGT
GTTTACTTGAGACAATAGCCAGTCTTACCCAGACAAGGGAATTCACAATG
GCCTAGCGAATAGGTGGGTTTACCATGAAAGAGTTAGGGAATCCCCCTGA
ACGAGTTTCTTCTCTAGGCCCAAAGAATCAGTATAATCAGGCATTTTACT
AAGAACCCCTGGAGGTGGGTTTAACAATAGACACCTGGCACCCTTCTTAG
AGGTAAACAGCAGGGACCGGTCCCTGCCATCCTTTGATGTATACATTCCT
TATGTTTTGTGTCACTGTAACTCGGTGAATGTATCTTGCCTGGNTTTCTT
ATTATTCTTCTGTATAAAAAGTATGATGCTCAACCTGAAAAATTACATTC
AGATTCTATATAATCTCCTGTGTTGCCTCTGTCTGTCATTTATTCGCCGA
CTCCTAGTCCATCTGCAACTAGAGACCTGTTCTATGCAGACTAGGGACCA
AGAGGATCTGAAGCATTGCTTACTGGTTTCATTTGCAATTCATGCTTATC
TTAACATTTCCGCATATCCAGGCCCTCCTGAAAAAGGTTGGGGCCCCCTA
TTATTTTACCGCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_j01.b1 MSMg01no468_j01.b1 CHROMAT_FILE:
MSMg01no468_j01.b1 PHD_FILE: MSMg01no468_j01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:49 2005
         (477 letters)



>mm_chr6_12999628_13000504
          Length = 877

 Score =  907 bits (469), Expect = 0.0
 Identities = 475/477 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgttgaaaaggctcaagcgaggaatcatacagtggtcagggaagaaatggggctagtt 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 677 catgttgaaaaggctcaagcgaggaagcatacagtggtcagggaagaaatggggctagtt 618

                                                                       
Query: 61  ctgggtttttgcaagttatacttattacaacacaaggctgatagaaaactgactacatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ctgggtttttgcaagttatacttattacaacacaaggctgatagaaaactgactacatta 558

                                                                       
Query: 121 cttttgacctataaagaacacaatttagctccattaatagaatatgaaggatcccacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cttttgacctataaagaacacaatttagctccattaatagaatatgaaggatcccacaaa 498

                                                                       
Query: 181 atgatgagtgttgatacacagagtaatactctgaactcctaaaaacgtcaaatgatggat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 atgatgagtgttgatacacagagtaatactctgaactcctaaaaacgtcaaatgatggat 438

                                                                       
Query: 241 gttctgtttagcaggagagttggcagacatctcagcccatctctgtgaagaatagggcaa 300
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 437 gttctgtttagcaggagagttggcagacatctcagtccatctctgtgaagaatagggcaa 378

                                                                       
Query: 301 ctccacgcaacctcataatagaatggcattctctctcagctaaattttctcccatgaggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ctccacgcaacctcataatagaatggcattctctctcagctaaattttctcccatgaggc 318

                                                                       
Query: 361 tcttccctttattcacagaccagaaaggaacaggtcatagtcaaccacagtccaggaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tcttccctttattcacagaccagaaaggaacaggtcatagtcaaccacagtccaggaaat 258

                                                                    
Query: 421 accaagtactcctcactctctggccatagttaacggtatatgaaatatgtttgtgaa 477
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 accaagtactcctcactctctggccatagttaacggtatatgaaatatgtttgtgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)