Query= MSMg01no469_d11.b1 MSMg01no469_d11.b1 CHROMAT_FILE:
MSMg01no469_d11.b1 PHD_FILE: MSMg01no469_d11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:43 2005
(540 letters)
>mm_chr6_8155399_8156338
Length = 940
Score = 820 bits (424), Expect = 0.0
Identities = 515/562 (91%), Gaps = 31/562 (5%)
Strand = Plus / Plus
Query: 5 gaattcttatgtcc--tctttgataagtaatcagacttggattaaggagagtataattca 62
||||||||||| | ||||||||||||| || |||||||||||||||||||||||||
Sbjct: 184 gaattcttatg--cagtctttgataagta---aggcttggattaaggagagtataattca 238
Query: 63 tgcattattgtagtt-aaaaactttccaactttcaagaagacactgttgtagaacgcaga 121
||||||||||||||| ||||||||| ||||||||||||||||||||||||||| | ||||
Sbjct: 239 tgcattattgtagttaaaaaactttacaactttcaagaagacactgttgtagagcacaga 298
Query: 122 agcaacaatttgtcctgtcagcaaattggtcaacttacagggaccaaaactaaacaaaaa 181
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 299 agcaacaatttgtcctgtcagcaaattggccaacttacagggaccaaaactaaacaaaat 358
Query: 182 gagaataatgttgttgagccaagtggagaaagtatttcaagagaga----cagtcaagtg 237
|||||||||| |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 359 gagaataatggtgttgagccaagtggagaaagtatttcaagagggacaatcagtcaagtg 418
Query: 238 tgtgtgacgtgcaagggggaagccttggtctttgaaactggcagagtgaatatcaatgtt 297
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 419 tgtgtgacctgcaagggggaagccttggtctttgaaaccggcagagtgaatatcaatgtt 478
Query: 298 gactttggcaagtagcatggtaggcatgaaagatgaagtggagtaaatattaggaagaca 357
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gactttggcaaatagcatggtaggcatgaaagatgaagtggagtaaatattaggaagaca 538
Query: 358 cagga-------------------aagtatgatcccatcttttggggaaaacagagtgat 398
||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 539 caggaaagtgggattcgagagagcaagtatgatcccgtcttttggggaaaacagagtgat 598
Query: 399 ttgtgtatgtaaaggttggatacagcataaatagagagttgaagatacccatgcaaagaa 458
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 599 ttgtgtatgtaaaggttggatgcagcaaaaatagagagttgaagatacccatgcaaagaa 658
Query: 459 aaacctgatatttgcaggtctcacaagaacagaagtatgtactccttccatatgccagct 518
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 659 aaacctgatatttgcaggtctcacaagaacagaagtatgtactccttccatacgtcagct 718
Query: 519 ggaagtgtgataatgactgaag 540
||||||||||||||||||||||
Sbjct: 719 ggaagtgtgataatgactgaag 740
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no469_d11.g1 MSMg01no469_d11.g1 CHROMAT_FILE:
MSMg01no469_d11.g1 PHD_FILE: MSMg01no469_d11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:43 2005
(239 letters)
>mm_chr6_8318815_8319452
Length = 638
Score = 447 bits (231), Expect = e-130
Identities = 237/239 (99%), Gaps = 1/239 (0%)
Strand = Plus / Minus
Query: 1 catatccgagaacataatctacaagaaaactctcccaaggagttcacatagaaaaaaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 438 catatccgagaacataatctacaagaaaactctcccaaggagttcacatag-aaaaaatg 380
Query: 61 tttctatggtcagaaacatgagaaaaacatgcagagcacaagttaatttttagtacatct 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 379 tttctatggtcagaaacatgagaaaaacatgcagagcacaagttaatttttagtacattt 320
Query: 121 tagtatctgagaaattatgtagtaaagaaatgacaaatattttttcacagtgcttttaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tagtatctgagaaattatgtagtaaagaaatgacaaatattttttcacagtgcttttaag 260
Query: 181 taaaaataatagagtaatttagtcaccttatacctgtaaacaacttatatcacctcgtt 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 taaaaataatagagtaatttagtcaccttatacctgtaaacaacttatatcacctcgtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 638
Length adjustment: 9
Effective length of query: 230
Effective length of database: 629
Effective search space: 144670
Effective search space used: 144670
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
