BAC Information

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BAC

Clone NameMSMg01-469H05
Chromosome6 (Build37)
Map Location 52,985,804 - 52,986,043
singlet/doubletsinglet
Overlap geneJazf1
Upstream geneLOC666391, Hoxa1, Hoxa2, Hoxa3, Hoxa4, Hoxa5, Hoxa6, Hoxa7, Hoxa9, Hoxa10, Hoxa11, Hoxa13, Evx1, EG666487, 1700094M24Rik, EG545841, Hibadh, Tax1bp1
Downstream geneLOC666259, LOC666516, D430007I03, Creb5, LOC384386, 1200009O22Rik, Cpvl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469H05.T7 (MSMg01no469_h05.b1)MSMg01-469H05.TJ (MSMg01no469_h05.g1)
ACCAG552684AG552685
length785794
length of high quality
(start - end)
240 (83 - 322)210 (79 - 288)
definitionCHROMAT_FILE: MSMg01no469_h05.b1 PHD_FILE: MSMg01no469_h05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:02 2005CHROMAT_FILE: MSMg01no469_h05.g1 PHD_FILE: MSMg01no469_h05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTCTTACTTTGTGGTAGNNANANGAANNANTATTTCAAAACTATCCG
NGGAANNCCATGATTTTCCAAATATACTAANAGACAACAGGCTGTGTAAG
AGTCATGCACACACAAAGGATAAGACAGACCTCATACAGCAGCCTTAGAA
ACACTATACAGACAGTCTGAAAGGCAGTAGACTCGCACAGTGACAGTTCT
CTGGACTAGGGCTGTGCTTTATGTTTTGTGTGTCTTAATTTTCTACAATA
TATTTTCATATTTTTAAGACTCATCTTCATTTTCTACAATGCATTCTAAA
CCAGAACATGAAATCTTTTTGGTTTTTATTGTGTGAGGGTCATAACTAAC
AGTGTTTAAAAACAAACAATCCCCCAACCTTCATTTTGAAATTGTGACAG
TCTCAATTCAATAAAAATTCATAATAATATTTCTCATAATAAGAGATTGT
ATACACGCTGATGCGCACTTGCTGGTCTTTCTGCCTTGGCCTATCTAATC
ATTTTATTTGTAGACTACTCATAGCAAATCTATAGCTCTGTGTCTTTCTG
TTCTTGAATTCTTAACTGACACAGTAGAGATTTCCACGTGACCTACCTCA
TACATCACATTCCTTCCCGACAATTCGATGGATCTTACTCTCCTCATTTC
CACTTATATCCCCCTCCTAAATTTATAACCTGCACTCTGAACATAGTGCA
ATACCGTCATGTTTCAACAAATGTTGATGGTTTTTCATCCCCCTTTATAC
CCCTTCTTTTATAGCTTTCCCCCCTTCATATTTTT
CTTCAATGATAATGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTCCTGAATCCACATGGCAA
AAGCGCGCGCGCGCACACACACACACACACACACACACACACACACACAC
ACACACACACACACACACACACAGTAAGTTCTTTAAAAAAAACAGAAAGG
AAAAACCATAATCATTATTGCTAAGCTGAGACTGTAGGACATGGGAATGG
GTTGGGTGGCTCAGGAGGATTTGGTAGGAGGTCTGCATAGACAGGAGGAT
GTGATGGATGTCTACATAGTTGTTATTTCTTATGATCTCTCCTCCGACTA
CTCAGGTACCCACTTTCATCCACATTCTCGTTGATAGCCTATGTACTAAT
CAGCCCTCATTCTACTTGCTCATAATGCTTATGTTGACCCTTTGTATATT
ACTACTTTCCATCCTAATTTTGATTTTCCTCCTTATTTTTTTCTCGCCTT
TCTAAAATAAAATTACTTCCACTTATATTTACATAGTATTTACTATTAAA
CATTATCCCCCCCCTACTTTACTTTATAATGACTTATTCTTTCTCTCTTT
TTATTTAACTCCTTCTCCCCCCCATCTCCTTTTATCTCTTTTATCCCCCC
TTTATTATCCCCTTTTCCCCCTTCCCCATTTCCCCCCCACCTTTTCTTTT
CCCCTCTCTTCCCTCTTTATTTTTTTTCCCCCTCTCCTTCTTCTTTTTTT
TTTTCCGTTTTTCCTTTTCACCCCTTTTTATCTTCCTATTATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_h05.b1 MSMg01no469_h05.b1 CHROMAT_FILE:
MSMg01no469_h05.b1 PHD_FILE: MSMg01no469_h05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:02 2005
         (240 letters)



>mm_chr6_52985604_52986243
          Length = 640

 Score =  456 bits (236), Expect = e-133
 Identities = 239/240 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacaacaggctgtgtaagagtcatgcacacacaaaggataagacagacctcatacagcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gacaacaggctgtgtaagagtcatgcacacacaaaggataagacagacctcatacagcag 260

                                                                       
Query: 61  ccttagaaacactatacagacagtctgaaaggcagtagactcgcacagtgacagttctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttagaaacactatacagacagtctgaaaggcagtagactcgcacagtgacagttctct 320

                                                                       
Query: 121 ggactagggctgtgctttatgttttgtgtgtcttaattttctacaatatattttcatatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggactagggctgtgctttatgttttgtgtgtcttaattttctacaatatattttcatatt 380

                                                                       
Query: 181 tttaagactcatcttcattttctacaatgcattctaaaccagaacatgaaatctttttgg 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 tttaagactcatcttcattttctacaatgcattcaaaaccagaacatgaaatctttttgg 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)