BAC Information

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BAC

Clone NameMSMg01-469J09
Chromosome6 (Build37)
Map Location 78,324,915 - 78,325,033
singlet/doubletsinglet
Overlap genenone
Upstream geneCtnna2, LOC668169, EG434050, Pap
Downstream geneReg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1, LOC384440
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469J09.T7 (MSMg01no469_j09.b1)MSMg01-469J09.TJ (MSMg01no469_j09.g1)
ACCAG552788AG552789
length772763
length of high quality
(start - end)
119 (332 - 450)293 (72 - 364)
definitionCHROMAT_FILE: MSMg01no469_j09.b1 PHD_FILE: MSMg01no469_j09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:13 2005CHROMAT_FILE: MSMg01no469_j09.g1 PHD_FILE: MSMg01no469_j09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTCAACTACTTTTGTGTGNNAAAAAGAATAATTTTTCAAAACAGGATGN
GNGGAATTNTATTTTTTCAATAAACTACTATAAATATGAAATTCCCTATA
GATTCTCTTCATGTTTTGTTTCCCACTCCCAGGGCAGGTATCATAAAAGA
CAGCTTTGTTGAGTGTTCCAAGGTCAGAGATTCATGACGCGACAGGACAA
GGATCAGGTTCTTATCAATCTTTCCCTCATAACCCTGATATTCTTACATT
TGGCTCCTATGCAAAGTTAAGCAACACTAATCAGTACTTTAGACCAAGAA
AATTAGACTAGCAGACGTTCCTTTTTCTTGCTAATGGGAGGTTGCATTCT
TCCAACGTATAATTCCTGGCTGATTTGTGTCTATCTTTCCCTGGTCAAAA
TGACTCTGAAGGAGCCACCCTCTATGTCAGTGTACTGATCTGATCTGATC
AGATCTGATCATACCTTTCAATTTCGAAGCTCTGAACTCAAGTAAGCTCA
CCCCTCCCTAACTTGTTCCCCAGTTCGGCATCCCACGTATTTTTAGGTGC
CACCCATGATGCCGCCCAATGTCATATCTCCCCCATTCTCCCCTTACACG
ACTTCTGACCTCGTCTTTTCTCGGGAATTTCTGGCTCATTTTGCCATGTT
TTGCCCTTCTCCTTTTTCTTACTCTCTAGCTACATTCCCATTTCCGCTGA
AAACACTTACTGTTAATTATTTTTTTCCCCCTTTTTCCTAAATCTATTTT
ATCTTCCCCCCTGGCCCTCTTT
CTGATTCCTCTGGAGAGGACAGGAGGACGCCGGTTCAAAAAATTTAGGTG
AACTATAGAATTACCAAAGAAATTCTTCTCAACAGTCTGTGTTGCGGGAA
CACTTCATTACCACCTTTCCCCAGCTGAAGAGTTCTGAATTCACGCAGTT
GAATCCTTCTCAACAGTCTGTTTTACGGGAACCTTTATGACCGTGACCCG
CAGTTCTGGTTCCGGAATGAGGGATCTTCCTTGCGCCGGTGATGGTAATC
GTTCCAGGTTTTCTCGTCCCGGGTTTTCTCGTCCCAGGTCTTCTCGTCCC
GGGTCTTCTCGTCCCTTGTTTTCTCGTCCCGGGTTTCAGCACCAACTCTT
ACACGTGTTCTCGCTGACCGGTCAGGATAGACGTATCAAACCGGAATCTT
CTGCGGCAAAAGCTTTATTGCTTACATCTTCTGGAGCCAGAGAGCAAGAG
AGCCAGAGAGAGATAGATAAAGAACAAGACAGCCAGATAGAGAATAAGCA
TGTGCCAACCCCGTTCCTTTTAAGGAGAATTATCCTCCGTCCAGGACATA
TTACTCCCTGATTGGTTGCTCCCCCTCGGCTCCGTTGTCCTCCCGCCAAA
GTCTGAATACCTGTTTGTAAAACTGTTCTTTCCCCTGTTCCCCCTACGCC
TATTTCCCTATTACAATCCTTCCCCCCCCCTCCCATTTTTTTTATTTCCC
CGTTTCCTTCCTTTTTTTTTTTTTCCTTTTACCATCCCCCCCACATTTTT
TTTCTCTTTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_j09.b1 MSMg01no469_j09.b1 CHROMAT_FILE:
MSMg01no469_j09.b1 PHD_FILE: MSMg01no469_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:13 2005
         (119 letters)



>mm_chr6_78324715_78325233
          Length = 519

 Score =  199 bits (103), Expect = 4e-56
 Identities = 115/119 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   taatgggaggttgcattcttccaacgtataattcctggctgatttgtgtctatctttccc 60
           ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 319 taatgggagtttgcattcttccaacgtataattcctggttgatttgtgtctatctttccc 260

                                                                      
Query: 61  tggtcaaaatgactctgaaggagccaccctctatgtcagtgtactgatctgatctgatc 119
           ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 259 tggtcaaaatgactctgaaggagccaccctctatgtcagtgcagtgatctgatctgatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 119
Length of database: 519
Length adjustment: 8
Effective length of query: 111
Effective length of database: 511
Effective search space:    56721
Effective search space used:    56721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)