Query= MSMg01no469_l19.b1 MSMg01no469_l19.b1 CHROMAT_FILE:
MSMg01no469_l19.b1 PHD_FILE: MSMg01no469_l19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:25 2005
(492 letters)
>mm_chr6_113688805_113689702
Length = 898
Score = 822 bits (425), Expect = 0.0
Identities = 473/493 (95%), Gaps = 9/493 (1%)
Strand = Plus / Minus
Query: 6 gaattcttgatctttcctcttgatcctccagagtgttaaggatctgcaacaccacacctg 65
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattcttgatccaccctcttgatcctccagagtgttaaggatctgcaacaccacacctg 456
Query: 66 ccttgaagagtcaggctttgtaattgcaaagtttgcactgggaaaggtgacttgttggaa 125
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ccttgaggagtcaggctttgtaattgcaaagtttgcactgggaaaggtgacttgttggaa 396
Query: 126 atggtgagaaatgtcagtctcaaatggaagccaccttttcaatccacttttctctcccaa 185
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 395 atggtgagaaatgtcagtctcaaatggaagctaccttttcaatccacttttctctcccaa 336
Query: 186 gaatttaatagtggatgagagaagaaaaaaaa----atgtgtgtctttgctcttttatta 241
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 335 gaatttaatagtggatgagagaagaaaaaaaaaaagatgtgtgtctttgctcttttatta 276
Query: 242 acttagtaggtagttactaagt--tttctatctgtaaaaaacattgtgctaaataactta 299
||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 275 actcagtaggtagttactaagttctttctatctgtaaaaaacattgtgctaaataactta 216
Query: 300 aagagattcaaagctgaggtgtatgatagtgcctgcctttagtccgagcactcaagaagg 359
|||||||||||||||||||||| |||| |||||| |||||||||||||||||| ||||
Sbjct: 215 aagagattcaaagctgaggtgtgtgatggtgcctacctttagtccgagcactc---aagg 159
Query: 360 cagaagcaggtaaatcccagggctggaggcagcctggtctatgcagtgagttctaggcag 419
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 cagaagcagataaatcccagggctggaggcagcctggtctatgcagtgagttctaggcag 99
Query: 420 ctagacctatgtactaagacagacagcgaatgcatcaaagctacagatagtttcaaggag 479
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 ctagacctatttactaagacagacagcgaatgcatcaaagctacagatagtttcaaggag 39
Query: 480 cttaccttctcta 492
|||||||||||||
Sbjct: 38 cttaccttctcta 26
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 898
Length adjustment: 10
Effective length of query: 482
Effective length of database: 888
Effective search space: 428016
Effective search space used: 428016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no469_l19.g1 MSMg01no469_l19.g1 CHROMAT_FILE:
MSMg01no469_l19.g1 PHD_FILE: MSMg01no469_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:25 2005
(423 letters)
>mm_chr6_113485113_113485935
Length = 823
Score = 803 bits (415), Expect = 0.0
Identities = 421/423 (99%)
Strand = Plus / Plus
Query: 1 actttgtagaccaggctggcctcgaactcagaaatccgcctgcctctgcctcccgagtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttgtagaccaggctggcctcgaactcagaaatccgcctgcctctgcctcccgagtgc 260
Query: 61 tgggattaaaggcgtgcgccaccacgcccggctcaagaatacacatttttaaaaacagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggattaaaggcgtgcgccaccacgcccggctcaagaatacacatttttaaaaacagtg 320
Query: 121 aggacctgcgaggcggggactactttagacttaggtgaaatgtttccgtggttattgtgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggacctgcgaggcggggactactttagacttaggtgaaatgtttccgtggttattgtgc 380
Query: 181 tcaagtggcacattatatactctccactgaaacctcactgaatgaatgttatcttattcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaagtggcacattatatactctccactgaaacctcactgaatgaatgttatcttattcg 440
Query: 241 gtggctgttttgtttgtgggtaagccactgttgctgaccacctccgaagacagtttgact 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 gtggctgttttgtttgtgggtaagccactgttgctgaccacctctgaagacagtttgact 500
Query: 301 acagagtcagtggggttcttcaggaacacagcagatggcctctcagaacatttggacctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acagagtcagtggggttcttcaggaacacagcagatggcctctcagaacatttggacctg 560
Query: 361 ggtttttgttttagctgttgtactcttcttcttgtttttatgatcatattcttgaagggt 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtttttgttttagctgttgtactcgtcttcttgtttttatgatcatattcttgaagggt 620
Query: 421 tta 423
|||
Sbjct: 621 tta 623
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space: 336996
Effective search space used: 336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
