BAC Information

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BAC

Clone NameMSMg01-469M16
Chromosome6 (Build37)
Map Location 72,050,816 - 72,224,386
singlet/doubletdoublet
Overlap geneSt3gal5, Atoh8
Upstream geneLOC619547, Thnsl2, Fabp1, Smyd1, Krcc1, Gm1070, Cd8b1, LOC100042853, Cd8a, Rmnd5a, LOC100042863, Rnf103, Vps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1, Mrpl35, Immt, Ptcd3, Rpo1-4, LOC668057
Downstream geneSftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3, Kcmf1, Tmsb10, Dnahc6, Suclg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469M16.T7 (MSMg01no469_m16.b1)MSMg01-469M16.TJ (MSMg01no469_m16.g1)
ACCAG552944AG552945
length765783
length of high quality
(start - end)
244 (73 - 316)239 (75 - 313)
definitionCHROMAT_FILE: MSMg01no469_m16.b1 PHD_FILE: MSMg01no469_m16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:29 2005CHROMAT_FILE: MSMg01no469_m16.g1 PHD_FILE: MSMg01no469_m16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,050,816 - 72,051,058)(72,224,154 - 72,224,386)
sequence
CTCTTAATTTGCGGCCGCTAAACGAATACTTTTCAAAGAGGATCCGCGGA
ATTCAGTCTTTCCCAACCACACAGTAGAAGGAAAGAACTAACTCAGTTCT
CTCCTGACCTCCACGTTTAGAAACGTGTGTAGGGAAAAGTAGAGCCACCT
AAAGTAACATGTGCCACCCTCAGATCAAGGGACAGAAAACACCAGGACCT
GTGTCCTACCCAGTCAGTCACCGCCTCTCCTAGCAGTTACCCTGGTCTGA
CCTGCTTCTCTCACACCGTGCTGACTTGGAAACCTGTGGCGTGTGTCTTC
CTTTATAAGCACTAATTGTCTGGGAAGGAGCAGGGAACCCCGTGCTGCCT
GTGGTTCAGTGCTGTGGCTCGCGGTGGTCACGGGGTAAGTTTGGTGCCTC
TTGTCTGTCATCAGTTGTTGAATGTCAAGCAACTTCCAGTGTTTGTCTGC
CCCAGGTAGTGCCGCTGTCACTGCTCTGTAGGTGCCTGGCTTTGGTAAGG
CATGCCTTGAGTGTGTTATGGGAACCTGCAGGGCATTAGGACACTCACTC
CCACCCCACCCCCCAGGCTAAGCTCTTTTAGTCTAGTCTCACAATGAACC
ATGTTGGGAGCTCCTTCATCCTCAAGGATGAAGGCAGCCGTTCCAGATGA
TGTTGCTGCCGGTGCTTTTTTATCAAGAAATTTCTGCCCCCCCTTGTTTT
ATGCCGTCCCTCGAATATTACGCCTTATCAAGCCTTGGCTCTCTTTGGTC
CTCACCCATCGCATC
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTATGGGAAAAAAAAAAAAAGTCCTGA
CCTGGTCATGAAAACCCCCTTAGGCAACACAGTGAGAAATTAGGGCCGAG
ACATAACTAACCAAAAGAAGGTCACTCTCCACGTAAGACACCACAAGTGC
TTATGCGGGGCCAATAGGCCATCAGTTGCAGGCAGTACAAGTTCTTTGTT
GGAAAAAATCTAAATGAGAGAGGTATGCCCTCAACGTGGTGGCACATTGG
TGTCACCCAGAGGATTTTTTAAGACCGTTTGCCTTGGGTTATCGAGACCA
GATATCCTGATCTACTGGTTTATGCCTTGAAGCAAGATGTCGCTGTGTAG
CCCAGGCTGGTCTTAAGTGAACTCTAATTTTTTAAAACTTTTATTTTTGT
GTGTATAGGGGTGGGGAGTGCCCCTCCCTTTTTTTTCTTTTCTCTCTTTT
TCCTCCTTTCCTTCTCTTTTTTTTTCCCCTTTTTTTCCCCTCCCCTTCTT
TTTTCTCCTTTTCCTTTCCCCCTCTCTTCCTCTTTTTTTTTTCCGTTCTT
TTTTCCTCCCCCCTCTTCCTTTCCTCTCCTTTCCCCTCTCCCCCTTTTTC
CCCCCCCTTTTCTTTTTTTTCCCTTCCTCCTTCCCTTTTCCTTTCCCCTC
CTCCTTCCTTTTCCTTTTTTTTTTATTCTCTCCCCCCCCTATTTCCTCCC
TTTTTCCCCCCTTTTTTTTTTTCCCCTTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_m16.b1 MSMg01no469_m16.b1 CHROMAT_FILE:
MSMg01no469_m16.b1 PHD_FILE: MSMg01no469_m16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:29 2005
         (244 letters)



>mm_chr6_72050616_72051259
          Length = 644

 Score =  462 bits (239), Expect = e-135
 Identities = 242/243 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtagaaggaaagaactaactcagttctctcctgacctccacgtttagaaacgtgtgtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtagaaggaaagaactaactcagttctctcctgacctccacgtttagaaacgtgtgtag 260

                                                                       
Query: 61  ggaaaagtagagccacctaaagtaacatgtgccaccctcagatcaagggacagaaaacac 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaaaagcagagccacctaaagtaacatgtgccaccctcagatcaagggacagaaaacac 320

                                                                       
Query: 121 caggacctgtgtcctacccagtcagtcaccgcctctcctagcagttaccctggtctgacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggacctgtgtcctacccagtcagtcaccgcctctcctagcagttaccctggtctgacc 380

                                                                       
Query: 181 tgcttctctcacaccgtgctgacttggaaacctgtggcgtgtgtcttcctttataagcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcttctctcacaccgtgctgacttggaaacctgtggcgtgtgtcttcctttataagcac 440

              
Query: 241 taa 243
           |||
Sbjct: 441 taa 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no469_m16.g1 MSMg01no469_m16.g1 CHROMAT_FILE:
MSMg01no469_m16.g1 PHD_FILE: MSMg01no469_m16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:29 2005
         (239 letters)



>mm_chr6_72223948_72224586
          Length = 639

 Score =  435 bits (225), Expect = e-126
 Identities = 231/233 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   aaaaaaaaaaaaagtcctgacctggtcatgaaaacccccttaggcaacacagtgagaaat 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aaaaaaaaaaaaagtcctgacctggtcatgaaaacccccttaggcaacacagtgagaaat 380

                                                                       
Query: 67  tagggccgagacataactaaccaaaagaaggtcactctccacgtaagacaccacaagtgc 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 379 tagggccgagacataactaaccaaaagaaggtcactctccacgtaagacaccacaggtgc 320

                                                                       
Query: 127 ttatgcggggccaataggccatcagttgcaggcagtacaagttctttgttggaaaaaatc 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttatgcggggccaataggccatcagttgcaggcagtacaagttctttgttggaaaaaatc 260

                                                                
Query: 187 taaatgagagaggtatgccctcaacgtggtggcacattggtgtcacccagagg 239
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 259 taaatgagagaggtatgccctcaacgtggcggcacattggtgtcacccagagg 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)