Query= MSMg01no470_f21.b1 MSMg01no470_f21.b1 CHROMAT_FILE:
MSMg01no470_f21.b1 PHD_FILE: MSMg01no470_f21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:15 2005
(243 letters)
>mm_chr6_114778668_114779308
Length = 641
Score = 426 bits (220), Expect = e-124
Identities = 237/244 (97%), Gaps = 4/244 (1%)
Strand = Plus / Plus
Query: 1 atctaaataataaagttggcaaaaaaaaaaaaaactgatcagcatgacaacaaagacaaa 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 atctaaataataaagttggcaaaaaaaaaaa---ctgatcagcatgacaacaaagacaaa 257
Query: 61 cctggggtgacagtggtgacagtgctccaagggaccggagagttggaggtagggcagctt 120
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 258 cctggggtgacagtggtgacagtgctccaaggcaccagagagttggaggtagggcagctt 317
Query: 121 gttccaagaaggctgttggttttggtttgtttttttt-aaggtatatttatctttatttg 179
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 318 gttccaagaaggctgttggttttggtttgtttttttttaaggtatatttatctttatttg 377
Query: 180 gtgtatatgaatgtttgcctgcatgtatttatgagtaccatgtgtgtgcctggtgtctga 239
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 378 gtgtatatgaatgtttgcctgcatgtatttatgagtaccatgtgtgtgcccggtgtctga 437
Query: 240 ggaa 243
||||
Sbjct: 438 ggaa 441
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 641
Length adjustment: 9
Effective length of query: 234
Effective length of database: 632
Effective search space: 147888
Effective search space used: 147888
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no470_f21.g1 MSMg01no470_f21.g1 CHROMAT_FILE:
MSMg01no470_f21.g1 PHD_FILE: MSMg01no470_f21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:15 2005
(442 letters)
>mm_chr6_114948153_114948998
Length = 846
Score = 443 bits (229), Expect = e-128
Identities = 262/275 (95%), Gaps = 4/275 (1%)
Strand = Plus / Minus
Query: 1 gttgtgtctaacgtaaaagtcctactctcccaccacatggagcctttgggcctcgccttc 60
||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 475 gttgtgtctgacgtaaaagtcctactctcccaccacgtggagccattgggcctcgccttc 416
Query: 61 aaggtgtggtccct----tctgagttcacccagatgccgtcttctgcagctgcctcccgc 116
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 aaggtgtggtcccttctctctgagttcacccagatgccgtcttctgcagctgcctcccgc 356
Query: 117 cagtgtccgcgatataaggacacttggtgtgcttccttccgtgtgctatttcagtctgac 176
| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 355 cggtgtccgggatataaggacacttggtgtgcttccttccgtgtgctatttccgtctgac 296
Query: 177 atcagagctgtagagagttccctccagaggctgccaaggatgcagctcggtggccccgta 236
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 295 atcaaagctgtagagagttccctccagaggctgccaaggatgcagctcggtggccacgta 236
Query: 237 tgaatgtcctgttatgtttaaaactactgagccca 271
|| ||||||||||||||||||||||||||||||||
Sbjct: 235 tggatgtcctgttatgtttaaaactactgagccca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 846
Length adjustment: 10
Effective length of query: 432
Effective length of database: 836
Effective search space: 361152
Effective search space used: 361152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
