Query= MSMg01no470_j19.b1 MSMg01no470_j19.b1 CHROMAT_FILE:
MSMg01no470_j19.b1 PHD_FILE: MSMg01no470_j19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:35 2005
(557 letters)
>mm_chr6_68024077_68025032
Length = 956
Score = 977 bits (505), Expect = 0.0
Identities = 543/557 (97%), Gaps = 4/557 (0%)
Strand = Plus / Plus
Query: 1 aatcctgaagttatcatataaaaatacatatctataataaactgaaaatactctgagcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatcctgaagttatcatataaaaatacatatctataataaactgaaaatactctgagcaa 260
Query: 61 atgcaactctaactagtttcattggcaccctacttgcctacaacattaatacatggccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgcaactctaactagtttcattggcaccctacttgcctacaacattaatacatggccca 320
Query: 121 ttctcaaagcaagttgtgttctacttcagtgatttcagatagaatatgaaagtttagaaa 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 ttctcaaagcaagttgtgttctacttcagtgatttcagatagaatatgaaagtttataaa 380
Query: 181 caccttctgaacatcgaaatggtaacagagttatctaggatgcagacttgtgagaacatt 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 caccttctgaacatcgaaatggtaacagagatatctaggatgcagacttgtgagaacatt 440
Query: 241 aaaaattatttcacacttttaccttattgtagattatgtgtgtgtcttgtctttaaaaaa 300
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaa-gatttcacacttttaccttattgtagattatgtgtgtgtcttgtctttaaaaaa 499
Query: 301 cagatttaaatattttaaaattaaaaactcatgtcatttgttctaaaggaagttttccga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 500 cagatttaaatattttaaaattaaaaactcatgtcatttgttctaaaggaagttttcaga 559
Query: 361 cagttagccaatattagctcttgtagtgggattcaggaactacttgttattccttacata 420
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 560 cagttagccaatattagctattgtagtgagattcaggaactacttgttattccttacata 619
Query: 421 tttggtaccacataaatataatcagaataaatagtttgcaagtgtgctctaaatgatgaa 480
|||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 620 tttggtacgacataaatttaatcaggataaatagtttgcaagtgtgctctaaatgatgaa 679
Query: 481 gcatgaagagaggaagaattgactcataagcatatcctactcttagttacccttaacaaa 540
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 680 gcatgaagagagaaagaattgactcataagcatatcctactcttagttacccttaa---a 736
Query: 541 tgaaaatatttattgta 557
|||||||||||||||||
Sbjct: 737 tgaaaatatttattgta 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 956
Length adjustment: 10
Effective length of query: 547
Effective length of database: 946
Effective search space: 517462
Effective search space used: 517462
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no470_j19.g1 MSMg01no470_j19.g1 CHROMAT_FILE:
MSMg01no470_j19.g1 PHD_FILE: MSMg01no470_j19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:35 2005
(549 letters)
>mm_chr6_68203928_68204880
Length = 953
Score = 727 bits (376), Expect = 0.0
Identities = 508/556 (91%), Gaps = 10/556 (1%)
Strand = Plus / Minus
Query: 1 ctcatctatgagtttagtttagaaaagtgctgactttcagaactgtaaggaaaatatttt 60
|||||||||||||||||||||||| || |||||||||| || | |||||||||||||||
Sbjct: 650 ctcatctatgagtttagtttagaagagaactgactttca-aaatttaaggaaaatatttt 592
Query: 61 ttcatcagttttgaagatattggaatttagtcacagaaacatg--atggaaaacatactt 118
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 591 ttcatcagttttgaagatattggaatttagtcacagaa--atgtaatggaaaacatactt 534
Query: 119 tgacttctctgtgcatttctaaaattcttattagttgatgcctttgtgaaaagagcttta 178
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 533 tgacttctctgtgcatttctaaaattcatattagttgatgccattgtgaaaagagcttta 474
Query: 179 tttaagatgagagagttacacacttgctcttgtctattaaatcctgtttaaggtgtgaat 238
|||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct: 473 tttaagatgagagagttacacaattgctcttgtctataaaatcttgtttaaggtgtgaat 414
Query: 239 aaccgtgaggataaacactggaaaaattaaatttagtagaggatat-----tcttgtttt 293
||| |||||| ||| |||||||||||||||||||| ||| ||||| |||||||||
Sbjct: 413 aactatgaggagaaaaactggaaaaattaaatttagaagaagatatgtttgtcttgtttt 354
Query: 294 acagaatcacagatgcctacacataataactccagtgtttctgggcctgtattgaaatag 353
||||||||||||| |||||||||| || |||||| |||||||||| ||| ||||||||||
Sbjct: 353 acagaatcacagaggcctacacatcatgactccaatgtttctgggtctggattgaaatag 294
Query: 354 agcacagtgctggagggtacatgaagcagagaagctttgttcaaagaataaaagaaatat 413
|| ||| ||||||||| | ||||||| ||||||||||||||||||| ||||||||| |||
Sbjct: 293 agtacattgctggaggattcatgaagtagagaagctttgttcaaagcataaaagaattat 234
Query: 414 agagtgacctctagtactataggtcaagtggtaaagacaaaaacaaacaaaacagaaaaa 473
|||||||||| ||||||||||||||| ||||||| ||||||||||| |||||||||| ||
Sbjct: 233 agagtgacctgtagtactataggtcatgtggtaaggacaaaaacaatcaaaacagaataa 174
Query: 474 acaaaaaacaaaaaataaataaaacaaaacaacaaccaaaaacttttctccagagacact 533
|||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 173 acaaaaaacaaaaaataagtaaaacaaaaccacaacaaaaaacttttctccagagacact 114
Query: 534 ctgcagttacttttgt 549
||||||||| ||||||
Sbjct: 113 ctgcagttatttttgt 98
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 953
Length adjustment: 10
Effective length of query: 539
Effective length of database: 943
Effective search space: 508277
Effective search space used: 508277
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
