BAC Information

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BAC

Clone NameMSMg01-470N05
Chromosome6 (Build37)
Map Location 129,186,163 - 129,186,454
singlet/doubletsinglet
Overlap genenone
Upstream geneTead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d
Downstream geneCd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470N05.T7 (MSMg01no470_n05.b1)MSMg01-470N05.TJ (MSMg01no470_n05.g1)
ACCAG553737AG553738
length781773
length of high quality
(start - end)
---292 (78 - 369)
definitionCHROMAT_FILE: MSMg01no470_n05.b1 PHD_FILE: MSMg01no470_n05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:51 2005CHROMAT_FILE: MSMg01no470_n05.g1 PHD_FILE: MSMg01no470_n05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCATATCTGCCGCGCCAAACGACTCACCATTTTCCAACAACCGCGGNA
ATTATTCCAGTTACCCCAACAACGCTCGCGATAATGCCCTTCCTGCCACT
ATTACATAGCTTAATGATTCCTGGGCATCAGACCACCCTATTGGACAGAA
TCTATATAAAGATGTACTTTAGTGGATTAGTGCTGTGTAAATGAATTTCA
TATTTGATGATGAACTTATAGAACTCTGAAATTGATACAAATAATCTCCA
GTATCCTATGGAATAAAAGCTGTAAACAGAAGTCTGTAAACTTCATGCCT
GAGGGCCAAATTGCCCTATTTATACTTCCCCCCGCTTGCAACCAATTTAT
AATCAAGCATTACATTTCTTCTAAGTTAGGAGCGAGGACCCTATCTGGCA
ATTAAAGACTGTATACGCACCACCGCCCATTTTATTGTACATTCACCGAC
CGAACATAAATGATGGACCCACTTATCCATACCAGACTCTCCAACACCCC
CCCACCCCGGCCACCCCCCTTTGACAAACCCGTACCACCTCATGATGCCC
ACCTTATTGCTTTACACTCATACCGCCCTCCATGGACCCCCCACCACGAC
CCTCGAACGCCTCCCGCCCCCCCCATCCCCTAACGGCACAGCCATGTCCC
CAACCCCTCGCTCGCCTTCCCTTATAACCTTACCTGATCCCACCCCCCTG
CTACTTCCCCGCCCTTCCACCTCCACTCCGCAACCTTATCCGCCCTTGAC
TCCACCACTCCTTTCCCCCCTCCCCCATTCG
CCCTATGATTTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCCACTTGTTTAGTCAGCACTCA
TGGAAACCACTATTACCTTTAGCCACGGGCCAGCACATGTAGTGTAGTCT
GGGACTCTAGCATTGGAATTCATGACGCATCTTGTAACAGGAGGCCTGGA
GCACATGCTGTAACTGAGCCCTGAGGTTCTAACATGCTCCAAACAAGACT
CGTGATGGAAATATGGAGTTTAGTCAAAATACAAAATGCCTGTGTGAGGA
ACACAGAAATGAATCCCATCTTCTAGAGAATGGACATCAGCTAGGGTTTC
AGTAGAGGAAGTATTAGTGCAGGGCCCAGAGGGTTTCCTGACTAAGCGCT
CTCAGTCTGACAGTGCTATAGCTGATCATTTGCTCACTTCCTGTTCTTCC
AGGCGGTTTGCAGAGTCTTCTTGCTCAAGAGAACCATCTGCTTCCTTAAT
TCTTCCCCTGCCTATGCCTAAAGCCATGTTAGGATCCCAAGACGAGCTCG
AGGCCCCCGCATCCCCTTGTTGATTCCTTTTCCTGTTTCTTTGATTGTAC
TTGCCTCCCCCCGACCCTTACTTCTGATTGCTTAATGTTCTTTTGGCTGG
CCCCCCCTCTCCCGATATTAATCTTAACATTTCAGAACCCCCTCTCCGCT
CTTTCTTTGCTCCTTGTCTTTTTACCACTCGTTCTCTGCCCACGGCCTTT
CCCCAATTCTTCCCTCTCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_n05.g1 MSMg01no470_n05.g1 CHROMAT_FILE:
MSMg01no470_n05.g1 PHD_FILE: MSMg01no470_n05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:51 2005
         (292 letters)



>mm_chr6_129185963_129186654
          Length = 692

 Score =  542 bits (280), Expect = e-158
 Identities = 289/292 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccacttgtttagtcagcactcatggaaaccactattacctttagccacgggccagcaca 60
           ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 492 cccacttgtttagtcagcactcatggaaaacactattagctttagccacgggccagcaca 433

                                                                       
Query: 61  tgtagtgtagtctgggactctagcattggaattcatgacgcatcttgtaacaggaggcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgtagtgtagtctgggactctagcattggaattcatgacgcatcttgtaacaggaggcct 373

                                                                       
Query: 121 ggagcacatgctgtaactgagccctgaggttctaacatgctccaaacaagactcgtgatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggagcacatgctgtaactgagccctgaggttctaacatgctccaaacaagactcgtgatg 313

                                                                       
Query: 181 gaaatatggagtttagtcaaaatacaaaatgcctgtgtgaggaacacagaaatgaatccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gaaatatggagtttagtcaaaatacaaaatgcctgtgtgaggaacacagaaatgaatccc 253

                                                               
Query: 241 atcttctagagaatggacatcagctagggtttcagtagaggaagtattagtg 292
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 252 atcttctagagaatggacatcagctagggtttcagcagaggaagtattagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)