NCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGCAGTCTTCAACCACAACTGTCTGCCCATCTCAAAACTTCTC
TGAACAATTCCAAACCAAAGTACTTAAAATGGCCCAGCAAAAAAATTATG
TTACACTTAAACAGGCAGTGGATCTTAGGAAGATAAAATACCTGTTCTAA
CTTTTGTATTCCCGACTTGGGTGTTAAATACAGCTACCACTATGGCTATT
TCATCAGTTCTTGTATTTGCTACTTGATCATAATTATTTTTCCATGTTTA
AAGGGAAAAAATGTCTAATGGAAACTTATTTTAAGATGCAGGATAAAAAC
TACTATGAAGATAAGGAAAAAGCATATTTTAATATCTTTGATAGCTATTC
TTCTCCACTTCATAAATGTGTCCCATGTATACATTTGGTAATGGAGCCTG
TGATTTATGAGGGCAGTTTTAGTTATCGTTTACAAATACACCTAATTGGA
AATTTTGGGTGCGGGAGATCAGATGAAGTTTAACAACAAAGTAAGGAATA
ATATATAGAAGGCATTTTAGTCTTTTCAGACTTGCTTTGCCTGCTCATTT
GCCTGTTGGAGACATGCTAAATCCCACAAAGCATTAGTATGTATGGAAGA
GATCGCTATTTTTGACCTGATATGTCTCAATTCTGTTTGGACATACCTCA
AAGTGTTCTTCATGTCAACTGGTCTTTTAAGTGACACCTGCTTACATTTC
AAAATTCACTGTGGNTGGCACAT

ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCAATCCCATTTTTTAA
TGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTCATATATA
TATATATATATATATATATATATATATATATATATATATATATATATATA
TATATATATATATATATATATATATATATATATATATATATATATATATA
GAGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGGGAGGGAGATTTATAGAGAGAGAGAGAGGGAGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGAGAGAGAGACAGATATATACATATACACATATATATATACAT
ACATANATACAGAGACACAGATTCTCCGTTTCATCTCGTGTCCTACTGCG
CGTGAGCGTCAGCGCGCGTCCGTGTGAGCGTGCGCGCCCCGATTCCGCCT
CTTGCTCGTTTTGCGCCCGCGCGCGCGCGCGAGCGCGGGGGGGGGGGCGC
GGTTGGCCTGTGTGTGTCCCCGCCCCCGCGGCTCATGGCTCTTTTGTCTT
TGGTGTGCGGGCGCGTTTGTAGGCATGTTCTCGCTTGCCCCCCCGCTAAC
TTGGGTGGGTTGGGGGTGGGGGCGCGGTCTCCTCCCGGTGGGGCGGCGCG
GTTGCGTTTGTTTCC

Query= MSMg01no471_f12.b1 MSMg01no471_f12.b1 CHROMAT_FILE:
MSMg01no471_f12.b1 PHD_FILE: MSMg01no471_f12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:34 2005
         (642 letters)



>mm_chr6_16447307_16448349
          Length = 1043

 Score = 1181 bits (611), Expect = 0.0
 Identities = 632/639 (98%), Gaps = 1/639 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgcagtcttcaaccacaactgtctgcccatctcaaaacttctctgaacaattcc 64
           ||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 gaattctgcagccatcaaccacaactgtctgcccatctcaaaacttctctaaacaattcc 264

                                                                       
Query: 65  aaaccaaagtacttaaaatggcccagcaaaaaaa-ttatgttacacttaaacaggcagtg 123
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 265 aaaccaaagtacttaaaatggcccagcaaaaaaaattatgttacacttaaacaggcagtg 324

                                                                       
Query: 124 gatcttaggaagataaaatacctgttctaacttttgtattcccgacttgggtgttaaata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gatcttaggaagataaaatacctgttctaacttttgtattcccgacttgggtgttaaata 384

                                                                       
Query: 184 cagctaccactatggctatttcatcagttcttgtatttgctacttgatcataattatttt 243
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagctaccaccatggctatttcatcagttcttgtatttgctacttgatcataattatttt 444

                                                                       
Query: 244 tccatgtttaaagggaaaaaatgtctaatggaaacttattttaagatgcaggataaaaac 303
           |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 445 tccatgtttaaagggacaaaatgtctaatggaaacttattttaagatgcagggtaaaaac 504

                                                                       
Query: 304 tactatgaagataaggaaaaagcatattttaatatctttgatagctattcttctccactt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tactatgaagataaggaaaaagcatattttaatatctttgatagctattcttctccactt 564

                                                                       
Query: 364 cataaatgtgtcccatgtatacatttggtaatggagcctgtgatttatgagggcagtttt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cataaatgtgtcccatgtatacatttggtaatggagcctgtgatttatgagggcagtttt 624

                                                                       
Query: 424 agttatcgtttacaaatacacctaattggaaattttgggtgcgggagatcagatgaagtt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agttatcgtttacaaatacacctaattggaaattttgggtgcgggagatcagatgaagtt 684

                                                                       
Query: 484 taacaacaaagtaaggaataatatatagaaggcattttagtcttttcagacttgctttgc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 taacaacaaagtaaggaataatatatagaaggcattttagtcttttcagacttgctttgc 744

                                                                       
Query: 544 ctgctcatttgcctgttggagacatgctaaatcccacaaagcattagtatgtatggaaga 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctgctcatttgcctgttggagacatgctaaatcccacaaagcattagtatgtatggaaga 804

                                                  
Query: 604 gatcgctatttttgacctgatatgtctcaattctgtttg 642
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gatcgctatttttgacctgatatgtctcaattctgtttg 843


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1043
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1033
Effective search space:   652856
Effective search space used:   652856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)