Query= MSMg01no471_h09.b1 MSMg01no471_h09.b1 CHROMAT_FILE:
MSMg01no471_h09.b1 PHD_FILE: MSMg01no471_h09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:43 2005
(244 letters)
>mm_chr6_44548556_44549197
Length = 642
Score = 427 bits (221), Expect = e-124
Identities = 237/243 (97%), Gaps = 2/243 (0%)
Strand = Plus / Minus
Query: 1 aaaatcctgggtttttttttttatgtttgctattttccaattgctaataaatttttctaa 60
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaatcctgg--ttgtttttttatgtttgctattttccaattgctaataaatttttctaa 384
Query: 61 tggaaagcactatgttgactaagatgcatcaaatgcgggtcaaacatacttgttaaaaag 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tggaaagcactatgttggctaagatgcatcaaatgcgggtcaaacatacttgttaaaaag 324
Query: 121 aaactatggaatatcaattgaccataagagaatttcaaactggcataatgagtcaataaa 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaactatggaatatcaatcgaccataagagaatttcaaactggcataatgagtcaataaa 264
Query: 181 tttgttaattgagcttttattcagggccactatgacagaactgggaaattgggggtttta 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tttgttaattgaacttttattcagggccactatgacagaactgggaaattgggggtttta 204
Query: 241 atg 243
|||
Sbjct: 203 atg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 642
Length adjustment: 9
Effective length of query: 235
Effective length of database: 633
Effective search space: 148755
Effective search space used: 148755
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no471_h09.g1 MSMg01no471_h09.g1 CHROMAT_FILE:
MSMg01no471_h09.g1 PHD_FILE: MSMg01no471_h09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:43 2005
(586 letters)
>mm_chr6_44349516_44350501
Length = 986
Score = 1110 bits (574), Expect = 0.0
Identities = 583/586 (99%)
Strand = Plus / Plus
Query: 1 aatatttgatcatgttaaatcatcctgaatagaattagcatattaaaataattgtgttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatatttgatcatgttaaatcatcctgaatagaattagcatattaaaataattgtgttaa 260
Query: 61 aatcattttaccttgtcagctaaattttaaagtctaaatgttttaataagatatttaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcattttaccttgtcagctaaattttaaagtctaaatgttttaataagatatttaagt 320
Query: 121 ctatctttatttcattttgaaaatttaagctctatgaaacatttttaaagaactttaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctatctttatttcattttgaaaatttaagctctatgaaacatttttaaagaactttaaaa 380
Query: 181 taatcacttttgctagtataaaaacaaataggacaagataaataagatgttagaaatatc 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 taatcacttttgctagtataaaaacaaataggacaagaaaaataagatgttagaaatatc 440
Query: 241 attatatacatgcaaggaacatagggcaagaatgaccgaaactgtcattaaaactgtggt 300
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 attagatacatgcaaggaacatagggcaagaatgactgaaactgtcattaaaactgtggt 500
Query: 301 gtagccttttgttctcctttaggatgaataccttacagaggattagtgatgctacagtat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtagccttttgttctcctttaggatgaataccttacagaggattagtgatgctacagtat 560
Query: 361 tggattctgaggcaaatgtcaccacctggttgaaaataattgacttttagagctgaacaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggattctgaggcaaatgtcaccacctggttgaaaataattgacttttagagctgaacaa 620
Query: 421 tgtgaaacctggattctgtatctatcttccgtgagtcctgaaaagattcacatcattcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtgaaacctggattctgtatctatcttccgtgagtcctgaaaagattcacatcattcat 680
Query: 481 tttccccttttgtgagtcagtgaatgggtttggcctgtgctgcagatttttgtttttaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttccccttttgtgagtcagtgaatgggtttggcctgtgctgcagatttttgtttttaat 740
Query: 541 ctaagggatgattatattgtgttccaaaacaggataaatacccacc 586
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctaagggatgattatattgtgttccaaaacaggataaatacccacc 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space: 562176
Effective search space used: 562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
