BAC Information

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BAC

Clone NameMSMg01-471J23
Chromosome6 (Build37)
Map Location 27,598,222 - 27,598,605
singlet/doubletsinglet
Overlap geneGrm8
Upstream geneLOC100041247
Downstream gene6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350, Snd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471J23.T7 (MSMg01no471_j23.b1)MSMg01-471J23.TJ (MSMg01no471_j23.g1)
ACCAG554347AG554348
length799778
length of high quality
(start - end)		45 (78 - 122)390 (77 - 466)
definitionCHROMAT_FILE: MSMg01no471_j23.b1 PHD_FILE: MSMg01no471_j23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:56 2005CHROMAT_FILE: MSMg01no471_j23.g1 PHD_FILE: MSMg01no471_j23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGACTCCGCNGGAA
TTNNCAAGTTAGTTGCCCCTCTCGAAAACATATATTTTACTTCAATGAAA
ACAAATGCTAAATATAAGCAAGCGATCATTGAACCTCAAAATGTGTCTTC
TTACTTANTAAGGATGGTAAGGCTATTATGAAATAAAATTTTTAAAAAAT
AGAATTCAGCAGGNAAGAAAATACNGNTTCAAACCACTGTGGCNNAAAAA
GAAACCGATTGCGGCTGGGGTTGGGGAGGTGGGTGCTAGGGGGNAGCGTG
ATTGGTGTGAGGAGGCCGGGTGTTGTGGGTGGGTGGGGGGGGAGGGGAGC
CGCCCTCCCCCAAAAAACGCGGGGTTTTTCCCGGGAAAAAAGGGGGTTTA
AAAAATCTTTTTTTGGGAAAAAAAAAACCCCCAAAAAAACTTCTCCCAAA
AAATTTTTCTCTCTTTTCCCAAAAACACCCCCCCCTCACAGGGGGGTCCC
CCCCGTGGGCGCCAAAATTTTTTAAAAAACCCCCCCCTCTCTGGGGGGAA
AAAAAAACCCCTTTTTTGGGGGCGGGGGGGGCTGGCGGCGGAGAGAAATT
TTTTTTTTTTTAAAAAAAAAACCCACGCCCCCCCTCCTCCCCTTTTTTTT
TTTTTTTTTCTCCCCCCCCACATAATTTTTTGTTGTTTGTGTTCCCCCCC
CCCCCCCAAAAAACATTTTCTCAAAAAAAAAAAAAAGGGGGCCCCGCCCC
CCCCCCCCCCCCTCCNTTTCCCCCCCGCGGGGAGAAGATATTATATTTG

NCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGCCCTGAACCAGGTTGTT
TTATAGCAGGGTCTAGTAAAACCTTTCAGTGACACTAAGTCGGGTTCATA
CAGCTCTTCACAGTGATTTCACATGCAGCTCTAACTGTGACTTTCTCAGA
GTGTCGTGGAGTATGCAGAGGAAATAGTACATTTCTGTTTTGTTGTTGTT
TGTTTGTTTGCTTGCTTTTTAAATCTGGAAGTCAGGCTCAGGGTTGTAAG
TGACAAGTGCTGGGAAATTTGTAAGTTATGGGATTGTCCCTTGAATGTGG
GTTCTCTCAGCCACAGTACTTTTTCTGCTCAGTCCTGTTTCTTATTAGAA
CAGGCCAAGGCAGGGAAGATGAAATGCAAGTGTAGTGTTGTATAATGTAG
TGTAGTAGTGAATGGTAGTGTTGGTGTGGTGTNATNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_j23.g1 MSMg01no471_j23.g1 CHROMAT_FILE:
MSMg01no471_j23.g1 PHD_FILE: MSMg01no471_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:56 2005
         (390 letters)



>mm_chr6_27598022_27598807
          Length = 786

 Score =  661 bits (342), Expect = 0.0
 Identities = 375/388 (96%), Gaps = 4/388 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttccagccctgaaccaggttgttttatagcagggtctagtaaaacctttcagtgacact 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 584 tttccagccctgaaccaggttgttatatagcagggtctagtaaaacctttcagtgacact 525

                                                                       
Query: 61  aagtcgggttcatacagctcttcacagtgatttcacatgcagctctaactgtgactttct 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 aagtcaggttcatacagctcttcacagtgatttcacatgcagctctaactgtgactttct 465

                                                                       
Query: 121 cagagtgtcgtggagtatgcagaggaaatagtacatttctgttttgttgttgtttgtttg 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||    ||||||||
Sbjct: 464 cagagtgtcatggagtatgcagaggaaatagtacatttctgttttgtt----tttgtttg 409

                                                                       
Query: 181 tttgcttgctttttaaatctggaagtcaggctcagggttgtaagtgacaagtgctgggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tttgcttgctttttaaatctggaagtcaggctcagggttgtaagtgacaagtgctgggaa 349

                                                                       
Query: 241 atttgtaagttatgggattgtcccttgaatgtgggttctctcagccacagtactttttct 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 348 atttgtaagttatgggattgtcccttgaatgtgggtcctctcagccacagtactttttct 289

                                                                       
Query: 301 gctcagtcctgtttcttattagaacaggccaaggcagggaagatgaaatgcaagtgtagt 360
           |||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 288 gctcagacctgtttcttattagagcaggccaaggcagggaagatgaaatgcaagtgcagt 229

                                       
Query: 361 gttgtataatgtagtgtagtagtgaatg 388
           |||||||| |||||| ||||||||||||
Sbjct: 228 gttgtatagtgtagtatagtagtgaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 786
Length adjustment: 9
Effective length of query: 381
Effective length of database: 777
Effective search space:   296037
Effective search space used:   296037
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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