Query= MSMg01no471_k16.b1 MSMg01no471_k16.b1 CHROMAT_FILE:
MSMg01no471_k16.b1 PHD_FILE: MSMg01no471_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:00 2005
(636 letters)
>mm_chr6_76298826_76299861
Length = 1036
Score = 1079 bits (558), Expect = 0.0
Identities = 600/618 (97%), Gaps = 11/618 (1%)
Strand = Plus / Minus
Query: 22 gggaacaaactcaaagggaatggttagtgttttcatatcacaaggacaacatcccagact 81
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1021 gggaacaaactcaaagggaatggttagtgttttcatctcacaaggacaacatcccagact 962
Query: 82 agcacaggttgtcagagaagtgaacccaagaatagtggcagtgtaaaatgattaagattt 141
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 agcacaggttgtcagagaagtgaacccaagaatagtggcagtgtaaaatgattaagatta 902
Query: 142 aaaaaaaaatgctgggccatttaatttaatttaatttaatttaatt-taa-tttaa---- 195
|||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 901 aaaaaaaaatcctgggccatttaatttaatttaatttaatttaattctaattttaatttt 842
Query: 196 -ttctaattttaattttttttttgtaggagggaggaaggattccttgcaaaaactatggt 254
|| | |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ttttt--tttt--ttttttttttgtaggagggaggaaggattccttgcaaaaactatggt 786
Query: 255 cagtgtcacttcatgaggaggaatggggtgctaaactttataattaaaagcagaaataga 314
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 cagtgtcacttcctgaggaggaatggggtgctaaactttataattaaaagcagaaataga 726
Query: 315 aatacatattaaggtgacatatttttcataagtctgtgctgagtttttacatatatacat 374
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 725 aatacatattaaggtgacatatttttcataagtctgtgctgagtgtttacatatatacat 666
Query: 375 atactatcttgcatatgagagagagagagagatcttaattttttaaacttagttttgcta 434
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 665 atactatcttgcatatgagagagagagagagatcttaaatttttaaacttagttttgcta 606
Query: 435 aggagattgagaccttgtaaatatgttttcagtattttaactacaaaaaaatcttttgtc 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 aggagattgagaccttgtaaatatgttttcagtattttaactacaaaaaaatcttttgtc 546
Query: 495 aatatgcctagtgacctgtattaagacacaatatccaagaaggaggtacaattatagtca 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aatatgcctagtgacctgtattaagacacaatatccaagaaggaggtacaattatagtca 486
Query: 555 aatgcttatatgcatgacaacataaagagagcatgtgaatcataagtcaacattgcattg 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aatgcttatatgcatgacaacataaagagagcatgtgaatcataagtcaacattgcattg 426
Query: 615 aaattgagacataaacat 632
||||||||||||||||||
Sbjct: 425 aaattgagacataaacat 408
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space: 642276
Effective search space used: 642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_k16.g1 MSMg01no471_k16.g1 CHROMAT_FILE:
MSMg01no471_k16.g1 PHD_FILE: MSMg01no471_k16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:00 2005
(568 letters)
>mm_chr6_76124601_76125568
Length = 968
Score = 1052 bits (544), Expect = 0.0
Identities = 562/568 (98%)
Strand = Plus / Plus
Query: 1 cattagttgctaaatttccttgattctttgaatattatatttcattctctgtcacaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattagttgctaaatttccttgattctttgaatattatatttcattctctgtcacaaaaa 260
Query: 61 ccctttacttcaaaaaagcctttgacatatcatataaaaaatgggacaagtgacaaataa 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 ccctttacttcaaaaaagcctttgacatatcatataaaaaaagggacaagtgacaaataa 320
Query: 121 tggacaattaaggaaaacaaaagcaagaggaatccagtacatttgaagaaataacttaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggacaattaaggaaaacaaaagcaagaggaatccagtacatttgaagaaataacttaat 380
Query: 181 gaaatacttatcttccacatacgcttcaggaaaagaggctatgaatatgggcaagaacct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaatacttatcttccacatacgcttcaggaaaagaggctatgaatatgggcaagaacct 440
Query: 241 ctagagtttatgagaaaatatagaacctctgtaaggaatgcacaaaccctcctgtattta 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctagagtttatgggaaaatatagaacctctgtaaggaatgcacaaaccctcctgtattta 500
Query: 301 tgattatattatagttagatttgtaagaaaataatcatgaggaactacatactcattatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgattatattatagttagatttgtaagaaaataatcatgaggaactacatactcattatt 560
Query: 361 tcaaaaaagaaaagagaaagggggagaaaacagggagaaaaagtaattggtaaatcatct 420
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 561 tcaaaaaagaaaagagaaagggggagaaaacagagagaaaaattaattggtaaatcatct 620
Query: 421 catccattcagaagaagttctttaaagtcatagaaagctatcagtcaagtgatgaagaca 480
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 621 catccattcagaagaagttctttaaagtcatagaaagctatcagtcaagggaagaagaca 680
Query: 481 atctcccaccagactctcattatgacggaattgaggagcaggaacttggatcactggtct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atctcccaccagactctcattatgacggaattgaggagcaggaacttggatcactggtct 740
Query: 541 gagaagcaactggtatgctggtatttcc 568
||||||||||||||||||||||||||||
Sbjct: 741 gagaagcaactggtatgctggtatttcc 768
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
