Query= MSMg01no471_l20.b1 MSMg01no471_l20.b1 CHROMAT_FILE:
MSMg01no471_l20.b1 PHD_FILE: MSMg01no471_l20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:06 2005
(674 letters)
>mm_chr6_9509352_9510425
Length = 1074
Score = 1268 bits (656), Expect = 0.0
Identities = 670/676 (99%), Gaps = 3/676 (0%)
Strand = Plus / Minus
Query: 1 aagtctgaagttgaagaatataacgagggtaataaaagatcagtagagagtttcaagagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932 aagtctgaagttgaagaatataacgagggtaataaaagatcagtagagagtttcaagagc 873
Query: 61 acactcaatcaagctgcagaattcaaagtttcaaacagatgcttgaatcaacaagaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 acactcaatcaagctgcagaattcaaagtttcaaacagatgcttgaatcaacaagaaaaa 813
Query: 121 aaagagagagtataaaagcctgtgaagtaattttatggaatatatttggcatcatcaagt 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 agagagagagtataaaagcctgtgaagtaattttatggaatatatttggcatcatcaagt 753
Query: 181 gaaatattaaatatttttttaaatatcaaggaaaagagtagttattaaaagtttatttaa 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 752 gaaatattaaatatttttttaaatatcaaggaaaagagtagttattaaaaatttatttaa 693
Query: 241 tcaaatactgggaagaagaagatggacataataaagacataagctcatcactagaatcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 tcaaatactgggaagaagaagatggacataataaagacataagctcatcactagaatcct 633
Query: 301 tgggaaagaaagtgaagataggtaaatgaaaggtatcttataaagtaggtaattatggaa 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tgggaaagaaagtgaagatagataaatgaaaggtatcttataaagtaggtaattatggaa 573
Query: 361 aataacttttcagcagcaaggattggacatatgtgtaattagactcaaaagaaaagattc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 aataacttttcagcagcaaggattggacatatgtgtaattagactcaaaagaaaagattc 513
Query: 421 actgtctagtccaggggattcatccccaacagcgaagtcttcatctccaaatatagagtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 actgtctagtccaggggattcatccccaacagcgaagtcttcatctccaaatatagagtg 453
Query: 481 agtaggacttcagagaattaaaaaccaagatttaagacaaagagatgctagttcgta--- 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 agtaggacttcagagaattaaaaaccaagatttaagacaaagagatgctagttcgtattg 393
Query: 538 ttgttcctcatatagggctgcagaccccttcagcaccttgggtactttctctagctcctt 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ttgttcctcatatagggctgcagaccccttcagcaccttgggtactttctctagctcctt 333
Query: 598 cagttgggaccccatgttccatctaatagatgactgtgagcatccacttctgtatttgcc 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 cagttgggaccccatgttccatctaatagatgactgtgagcatccacttctgtatttgcc 273
Query: 658 aggcactgatataacc 673
||||||||||||||||
Sbjct: 272 aggcactgatataacc 257
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_l20.g1 MSMg01no471_l20.g1 CHROMAT_FILE:
MSMg01no471_l20.g1 PHD_FILE: MSMg01no471_l20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:06 2005
(655 letters)
>mm_chr6_9347807_9348859
Length = 1053
Score = 1195 bits (618), Expect = 0.0
Identities = 646/656 (98%), Gaps = 4/656 (0%)
Strand = Plus / Plus
Query: 1 accccctttcttcttaagtcaacgacctagccctgagaacacaatttcatggactgtttc 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 accccctttcttcttaagtcaatgacctagccctgagaacacaatttcatggactgtttc 260
Query: 61 ttaggcaatattttcagagatgtcatgaggaactaggaaatgggcatcttgtgtgccagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaggcaatattttcagagatgtcatgaggaactaggaaatgggcatcttgtgtgccagg 320
Query: 121 acgtcattcctaataacacagtgtctgaggaaatgaggctgggagagatggctagtatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 acgtcattcctaataacacagtgtctgaggaaatgaggctgggagagatggctggtatgg 380
Query: 181 tggtgaaggacaggctggcccatctgtgaataatggtgactcaggggatgatgaccttca 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 tggtgaaggacaggctggcccatctgtgaataatagtgactcaggggatgatgaccttca 440
Query: 241 gtcagaacagatctcccctcctcctcatctcaggatatgtgcaagggtaggtcggtcagg 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcagaactgatctcccctcctcctcatctcaggatatgtgcaagggtaggtcggtcagg 500
Query: 301 aacagttttgggagtgataagaagtttccctgtttgtcttttagatagtagtaaaaatcc 360
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 aacagttttgggagtgataagaagtttcc--gtttgtcttttagatagtagtaaaaatcc 558
Query: 361 tctagcttgtttcagtccagaaagtagcagcctgtgcatacagacagatttttctcccct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tctagcttgtttcagtccagaaagtagcagcctgtgcatacagacagatttttctcccct 618
Query: 421 ttgcaaactgtcaggtt-caattccttcttttgccagagttgcactaattttgtaactca 479
|||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 619 ttgcaaactgtcag-ttacaattccttcttttgccagagttgcactaattttgtaattca 677
Query: 480 acctaaaatgcttcttaggggcatggcaagctaatgctggtaaaagacaaggctcctctc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 acctaaaatgcttcttaggggcatggcaagctaatgctggtaaaagacaaggctcctctc 737
Query: 540 caggtaggaatttcatgacataatatatgattgatagtgccaaagtcaggggataattct 599
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 caggtagggatttcatgacataatatatgattgatagtgccaaagtcaggggataattct 797
Query: 600 caacccattgaaacatagatgatttagtgagttcatttagcttttcctctggcaaa 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 caacccattgaaacatagatgatttagtgagttcatttagcttttcctctggcaaa 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1053
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1043
Effective search space: 672735
Effective search space used: 672735
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
