BAC Information

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BAC

Clone NameMSMg01-472C04
Chromosome6 (Build37)
Map Location 136,176,435 - 136,176,975
singlet/doubletsinglet
Overlap genenone
Upstream gene8430419L09Rik, Gsg1, Pbp2, LOC100043890, Emp1, Grin2b
Downstream geneEG668137, LOC545887, E330021D16Rik, EG627022, LOC100043893, Atf7ip, 1100001H23Rik, LOC100043894, Gucy2c, Hist4h4, H2afj, Wbp11, BC049715, C030030A07Rik, Art4, Mgp, Erp27, Arhgdib, Pde6h, Rerg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472C04.T7 (MSMg01no472_c04.b1)MSMg01-472C04.TJ (MSMg01no472_c04.g1)
ACCAG554740AG554741
length761761
length of high quality
(start - end)
587 (45 - 631)542 (73 - 614)
definitionCHROMAT_FILE: MSMg01no472_c04.b1 PHD_FILE: MSMg01no472_c04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:40 2005CHROMAT_FILE: MSMg01no472_c04.g1 PHD_FILE: MSMg01no472_c04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTATATTGATAATCTCTGTGTGCAAGACTAAAACATCCAGAGAGG
TGTTGGAATTATGCCAAATACCCTGCAAGTGTCTTTGAACCCTTCCCCAA
TTGTAATGACTGTCGTCGTAATCCTTAGAAGTAACACAAATCCACTGGTA
GCTGGCATGGCACTCGAGATGGCTCCTTTCTTTCAGGCTCTGAACCTGTT
CTCCAATCATTTGAATTGTATTATAAAGAGCATCACTATGTTGTTCCAAA
TGCCTATCTAAATCCTCCTGAATACTCAGAGCATTAGTGACATTTTTTGC
TAGATGGTTAACAAAAGCAGCTGTCTTAACTTCTTGTGTTAAAGCAATTG
CAGAGGCAGTGGCGCTATATCAATGCAATTAAAGCTGCTATACCAGCAAT
AATCAAGCCCACTGCCCTCGTGCTTATGCTTAAAGCCTGACCCACTTCTT
CCGGTACCTGCAAGCTTTTTCCAGAATACCAAGGTCCTGTACTATTCACA
GGCAATAAAACAAAAGCAGGTTGCTAGACCACCATAATAGACATGCCCGT
TTTCAGCACACTAACACAATTAGAAAGTGTACAATCAATACAACTCACAT
TAAATACTGTAGAAGAAACAAAAGTAATTTTGACATGGCCAATTAATAAA
AGATTGGGAGCTTTAACACATGCACTAACACTTGTTTTGAAATCAGATTC
TGTCTTAATTN
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTAACCTTATTGCCACACTACTGACAAC
AGGTAGGGCATGAAATTATCTGCTTGCCTATCAATAGAGAAATGATAAAG
AAAATGTGGCTTATTGACACAGCAGAGTAACGACCATTCAGCTAGTAATG
ACCAAGGAGGCCTACTAGATGGGACTGTAAGATATTACTGTCAAATGAAA
TAATCCAGACACCAAACGACAAGCCCTTCCTATCATCCATGGTGGATATT
GACAGTTAAATCTTGTGTATTGTCTTTCAGCAACCAGAGCTGCTGAGCGT
TCAGAAGTACAGCGGCCATGTCAGTCACAGGCCAGTATCCTGGGACCCTT
CAACTTGTCCTCTAACTCCACGGAGTTCTCTGAATCTTGAAGGGGGTGAT
AGTCCAAAACTTGGTTGCTTTTATCTGAACTTCCTCCAAGATTTCTTTCC
TGTCTGAGAGGCTAAGGATTTTAGTAGAAGTCACCACACATATTAGAACC
TAGAAAATTAGAAAAACACACAGGAAATCAGGGTTTAACTTGATTTTATA
AAGTTGGCTTCTAAGATGTAACTGCCTGTCAGTCTTAACCTGGTGGTGTG
GTTACCACACAGGATGAACTATGTATCATGGCCTGATGCTTTCACCATGA
ACCGACTGGGAAATGTGAACCACTAACTAAATGCCAAATTATTAAAAATA
AAAAGGCATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_c04.g1 MSMg01no472_c04.g1 CHROMAT_FILE:
MSMg01no472_c04.g1 PHD_FILE: MSMg01no472_c04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:40 2005
         (542 letters)



>mm_chr6_136176234_136177175
          Length = 942

 Score = 1033 bits (534), Expect = 0.0
 Identities = 540/542 (99%), Gaps = 1/542 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaaccttattgccacactactgacaacaggtagggcatgaaattatctgcttgcctatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ctaaccttattgccacactactgacaacaggtagggcatgaaattatctgcttgcctatc 261

                                                                       
Query: 61  aatagagaaatgataaagaaaatgtggcttattgacacagcagagtaacgaccattcagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aatagagaaatgataaagaaaatgtggcttattgacacagcagagtaacgaccattcagc 321

                                                                       
Query: 121 tagtaatgaccaaggaggcctactagatgggactgtaagatattactgtcaaatgaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tagtaatgaccaaggaggcctactagatgggactgtaagatattactgtcaaatgaaata 381

                                                                       
Query: 181 atccagacaccaaacgacaagcccttcctatcatccatggtggatattgacagttaaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atccagacaccaaacgacaagcccttcctatcatccatggtggatattgacagttaaatc 441

                                                                       
Query: 241 ttgtgtattgtctttcagcaaccagagctgctgagcgttcagaagtacagcggccatgtc 300
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttgtgtaa-gtctttcagcaaccagagctgctgagcgttcagaagtacagcggccatgtc 500

                                                                       
Query: 301 agtcacaggccagtatcctgggacccttcaacttgtcctctaactccacggagttctctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtcacaggccagtatcctgggacccttcaacttgtcctctaactccacggagttctctg 560

                                                                       
Query: 361 aatcttgaagggggtgatagtccaaaacttggttgcttttatctgaacttcctccaagat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatcttgaagggggtgatagtccaaaacttggttgcttttatctgaacttcctccaagat 620

                                                                       
Query: 421 ttctttcctgtctgagaggctaaggattttagtagaagtcaccacacatattagaaccta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctttcctgtctgagaggctaaggattttagtagaagtcaccacacatattagaaccta 680

                                                                       
Query: 481 gaaaattagaaaaacacacaggaaatcagggtttaacttgattttataaagttggcttct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaaaattagaaaaacacacaggaaatcagggtttaacttgattttataaagttggcttct 740

             
Query: 541 aa 542
           ||
Sbjct: 741 aa 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)