BAC Information

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BAC

Clone NameMSMg01-472O13
Chromosome6 (Build37)
Map Location 11,154,067 - 11,154,269
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040285, LOC667650, AA545190
Downstream geneNdufa4, Phf14, LOC100040844, EG625347, LOC435879
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472O13.T7 (MSMg01no472_o13.b1)MSMg01-472O13.TJ (MSMg01no472_o13.g1)
ACCAG555332AG555333
length769819
length of high quality
(start - end)
452 (48 - 499)210 (78 - 287)
definitionCHROMAT_FILE: MSMg01no472_o13.b1 PHD_FILE: MSMg01no472_o13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:42 2005CHROMAT_FILE: MSMg01no472_o13.g1 PHD_FILE: MSMg01no472_o13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTCCGCTCTGAGTCCCATTTTTTAGTGGGGTTATTTGAT
TTTCTGGAGCCCACCTTCTTGAGTTCTTTATAAATATTGGATATTAGTCC
CCTATCCGATTTGGGATATGTAAAGATCCTTTCCCAATCTGTTGGTGGTC
TTTTTGTCTTATTGACGGTGTCTTTTGCTTTGCAGAAACTTTGCAATTTT
ATGAGGTCCCATTTATCGATTCTTGATCTCTTCAGCACAAGCCATTGCTG
TTCTATTCAGGAATTTTTTCTCTTTACCCAAATCTTCGAGGCTTTTCCCT
ACTTTCTCCTCTACAAGTTTCAGTGTCTTTGGTTTTATGTGAAGTTCCTT
GATCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATTGATTC
AAATTCTTCTACATGATAACCGCCAGTTGTGCCAGCACCATTTGTTGAAA
ATGCTGTCTTTTTTCCACTGGATGTTTTTAGCTCCCTTGGTCAAGATTAT
GTGACCTTATGTGTGTGCTCCCTTTTTTCGGCCCTTCACATTCCATTCTC
TTGTTTTTACCCCGTCTGCCCTTTTTTCTTTCTCCCTGCCCTTTTTTTTT
TTTTTTTTTTCTTGCCTTTCCTTTCTTTTGCTTTTCTTCTTCTTCCCCCC
TGTATTTGACGCTCTATCTCCTTTTTCACAAACCCACACCTCTTTTTTCC
CTCCTTCTCTTTTCTTTTT
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTGTTGTAAGAGTTGAAGACTC
AGAAATGTTATTTGACCTAGAAGTGTTCATATATAGTTCTAAATTTCATA
CTAATAAGCTTGTATTACTTGAAGCAACACTTCTACAGAAAACCATATCA
AGTGCAAAAAACTCAGTGCCTGGTACTCTGCATGTATCTTGTGTCTCTGT
CTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTNNNTNNNNNNNNNN
NNNNNNNNNNNNNNNTTTTTNCTCNTTTTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTTTTTTTTTCCCCCCCCCCCCCCTTTTTGTTNCTTGCCCCC
TCTTTTTTTTCTCCCCTCTTTCTCCTCTTCCCTTTTTCTTGCCTTTTTCT
TTCCCCCTCCCCTCCTTCTCCTTCTTCTTCCTTTTTTCTCTTTCGCCCTT
TTCTCTCCCCTCTTTTTTTCCTTCCCTCCCCCTTTTCTTTTTTCCCCCTT
TCGTCCCCTCCTTTCTCTCGCTTTTGCTCCCTGTGCGCTGGTCTTCGCCG
CCCCGCTTCTCTTCCTTTGCTCTCTTCTTTTTTCTCGCTTCCCTTGCTTT
CGCCTCCCGCCCGCTCCTGTTTGTTTCTTGTCTCTTCGCATCCTCTTTTT
CTTTTTTTCTTTTGTGTGCGCCCCCCCGCCCCCGTTTTACCCCTCGTATT
TTTGGATCCCCGCTCCCCCCTTTTCCCTTTTTTCTCCCCTCTCTTGCCCT
TCCGTTCTTCTTCCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_o13.g1 MSMg01no472_o13.g1 CHROMAT_FILE:
MSMg01no472_o13.g1 PHD_FILE: MSMg01no472_o13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:42 2005
         (210 letters)



>mm_chr6_11153897_11154503
          Length = 607

 Score =  352 bits (182), Expect = e-102
 Identities = 199/206 (96%), Gaps = 3/206 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgttgtaagagttgaagactcagaaatgttatttgacctagaagtgttcatatatagt 60
           ||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||
Sbjct: 373 actgttgtaagagttgaagactcagaaatgttatttgacc---cagtgttcatatatagt 317

                                                                       
Query: 61  tctaaatttcatactaataagcttgtattacttgaagcaacacttctacagaaaaccata 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tctaaatttcatattaataagcttgtattacttgaagcaacacttctacagaaaaccata 257

                                                                       
Query: 121 tcaagtgcaaaaaactcagtgcctggtactctgcatgtatcttgtgtctctgtctctgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 256 tcaagtgcaaaaaactcagtgcctggtactctgcatgtatcttgtgtctctgtctctttg 197

                                     
Query: 181 tgtgtgtgtgtgtgtgtgtgtgtgtg 206
           ||||||||||||||||||||| ||||
Sbjct: 196 tgtgtgtgtgtgtgtgtgtgtttgtg 171


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 607
Length adjustment: 9
Effective length of query: 201
Effective length of database: 598
Effective search space:   120198
Effective search space used:   120198
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)