BAC Information

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BAC

Clone NameMSMg01-473E11
Chromosome6 (Build37)
Map Location 51,722,685 - 51,723,129
singlet/doubletsinglet
Overlap genenone
Upstream geneEG625167, Nfe2l3, Hnrpa2b1, Cbx3, Snx10, LOC100041820
Downstream geneSkap2, LOC666391, Hoxa1, Hoxa2, Hoxa3, Hoxa4, Hoxa5, Hoxa6, Hoxa7, Hoxa9, Hoxa10, Hoxa11, Hoxa13, Evx1, EG666487, 1700094M24Rik, EG545841, Hibadh, Tax1bp1, Jazf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473E11.T7 (MSMg01no473_e11.b1)MSMg01-473E11.TJ (MSMg01no473_e11.g1)
ACCAG555615AG555616
length775798
length of high quality
(start - end)
445 (71 - 515)245 (71 - 315)
definitionCHROMAT_FILE: MSMg01no473_e11.b1 PHD_FILE: MSMg01no473_e11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:17 2005CHROMAT_FILE: MSMg01no473_e11.g1 PHD_FILE: MSMg01no473_e11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGCGGAA
TTCCACTGGCATCCCCACCTCAGGGCGGCCAATGGGCCACCCCATTGCTC
CTCCATGGTGTCCTCCGAGAGCTTCAGTTAATAGGAAAAACTTTAAGCAA
GAATCAGTCAGTTGGCTTACTTAATCCAGACATCCAAATGCCTGCATGTA
ACTGAAGTAGAGGGTTGAATTTAACACCACCTACACAGGTGGAACCATTA
CCTCATGGAGATCTAGCACCACATGACTGAGATAGCCACACAGTCCTTCG
GCTTCAATAGTTCATTCATTCATTTATTCATTCATTCACTCACTGGATCA
CTATTATTTATCATTTGTCTTGAAACATCACCATGGGTAAGTGTCGGAGG
CTTGCCGCTGTATTGGTCACTTCTGTTATTGTTAGGTGTCTTAGGGTCTC
CATTGATGTGATTTACACCACACCAGGGCAGAAACTACAGAAAAGGAAGA
TCTTTTTGTAAGACAGGGAGCCAAGACAGGATGGGATACTAGGAGAATTA
TGTTAAGACTCTCTGGGAAGCAAGTGCCCAGTGATCTGATGACCTCTCCC
TATACTCCACCCCTTATAGGCCCCACCCCTCCTTTTAACACACTTGAAAC
ATAGCTTTCTGATTTTTCCTTGAGGGAGAAACCACCTGCCAACATACCAT
CACAATGGTGAGATTCCTACGACCTACTTAACTCTGATTTTATATCGCCT
ACTTTTCCACGTCCTTTTAGCTCTC
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTGGTTTAGTATATACCCCAGTTTTTGATT
GGGTTGTTTGTTTTTTTGGTGATTAACTTCTTGAGTTCTTTATATATTTT
GGATGTTAGCCTTTTATAGGATGTGGGGTTAGTGAAGATTTTTTCCCAAT
CTCTAGGTTGCTGATTTGTCTTTATCAACTATGTCCTTTGCCCTACAGAA
TCTTTCCAGTTTCATGAGGGCTCATTTATCAATTGTTGATCTTACAGCAT
GAGCCATTGGAGTTCTTTCATCTTTTTTCACCCTGCGCCAAATGAGTTCA
AGGCTCTTTCCTACTCCTCCTCTATTAGATTCAATGTATCTGACTTTATA
TCTGACCCCTTGCTCTACTCCGCACTTGAGCTTCGCCCCTTCCTCCCAAT
ATGTGTCTTTCTTTCATTCGTCCTCCTACACACCGCCTCTTTTACCCCTC
CCTTCTTTCCTGTTATACGCTCCCCCTCTTCCCCCGCCTCCTTTTTGCTC
CCCTTTGCCACGAACTTATTCCCCCTCCCTTTCCCCCTCTTCATCTCTTC
CCCATTCCCCTTTCCTTCTCTTTCACTCCGGTCCTCCCCTTCCTCCTCCT
CTCTTCACCCTGTCATCCTCTCTCTTTTTTTTTTTCTCTTCCGCTCCTCC
TCGTTCCTTTCCTTTCCTTTCTCTTCCCCTTTCCTCTTCCCCTTTTCTCC
CCCTCTTTTCCCATTCTCCTCCATCTCTCTCCTCCTTTCTCCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_e11.b1 MSMg01no473_e11.b1 CHROMAT_FILE:
MSMg01no473_e11.b1 PHD_FILE: MSMg01no473_e11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:17 2005
         (445 letters)



>mm_chr6_51722485_51723329
          Length = 845

 Score =  853 bits (441), Expect = 0.0
 Identities = 444/445 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagggcggccaatgggccaccccattgctcctccatggtgtcctccgagagcttcagtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagggcggccaatgggccaccccattgctcctccatggtgtcctccgagagcttcagtta 260

                                                                       
Query: 61  ataggaaaaactttaagcaagaatcagtcagttggcttacttaatccagacatccaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataggaaaaactttaagcaagaatcagtcagttggcttacttaatccagacatccaaatg 320

                                                                       
Query: 121 cctgcatgtaactgaagtagagggttgaatttaacaccacctacacaggtggaaccatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgcatgtaactgaagtagagggttgaatttaacaccacctacacaggtggaaccatta 380

                                                                       
Query: 181 cctcatggagatctagcaccacatgactgagatagccacacagtccttcggcttcaatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctcatggagatctagcaccacatgactgagatagccacacagtccttcggcttcaatag 440

                                                                       
Query: 241 ttcattcattcatttattcattcattcactcactggatcactattatttatcatttgtct 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcattcattcattcattcattcattcactcactggatcactattatttatcatttgtct 500

                                                                       
Query: 301 tgaaacatcaccatgggtaagtgtcggaggcttgccgctgtattggtcacttctgttatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaaacatcaccatgggtaagtgtcggaggcttgccgctgtattggtcacttctgttatt 560

                                                                       
Query: 361 gttaggtgtcttagggtctccattgatgtgatttacaccacaccagggcagaaactacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttaggtgtcttagggtctccattgatgtgatttacaccacaccagggcagaaactacag 620

                                    
Query: 421 aaaaggaagatctttttgtaagaca 445
           |||||||||||||||||||||||||
Sbjct: 621 aaaaggaagatctttttgtaagaca 645


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)