Query= MSMg01no473_h02.b1 MSMg01no473_h02.b1 CHROMAT_FILE:
MSMg01no473_h02.b1 PHD_FILE: MSMg01no473_h02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:31 2005
(579 letters)
>mm_chr6_92689953_92690932
Length = 980
Score = 1029 bits (532), Expect = 0.0
Identities = 565/576 (98%), Gaps = 1/576 (0%)
Strand = Plus / Minus
Query: 5 gaattcatgcttctttc-ctatgtaagtttctctggcatgtaacccctctaagtgcatat 63
|||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 780 gaattcatgcttctctcagtatgtaagtttctctagcatgtaacccctctaagtgcatat 721
Query: 64 tttatctacctctagttagcttagcttgcgtggctcatctggctttctcaggtccctcac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 tttatctacctctagttagcttagcttgcgtggctcatctggctttctcaggtccctcac 661
Query: 124 tggtacatcttgctttggcatgttgatatattcagcctttgctttcttgctggttttggt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tggtacatcttgctttggcatgttgatatattcagcctttgctttcttgctggttttggt 601
Query: 184 tgttctgtgaaccttcctaccgccatttctcctttcgtgtttggggttgagatgtttgct 243
||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 600 tgttctgtgtaccttcctacctccatttctcctttcatgtttggggttgagatgtttgct 541
Query: 244 aaatctcccacgatctgagtgtctcagttctgttctctttacgtaaaacgtctactcatc 303
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 aaatctcccatgatctgagtgtctcagttctgttctctttacgtaaaacgtctactcatc 481
Query: 304 ctccttctgctttctcctcataccctaccctcccttctgtcttcccctctgccctttctg 363
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 480 ctccttctgctttctcctcatatcctgccctcccttctgtcttcccctctgccctttctg 421
Query: 364 ctggccagttacacatataaaccccagagctggaccgccttggcttacgtcccaggtcat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ctggccagttacacatataaaccccagagctggaccgccttggcttacgtcccaggtcat 361
Query: 424 ctcctactggtgttgtgatctagccttgtatactttaaattttcacgtctggcagataga 483
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ctcctaatggtgttgtgatctagccttgtatactttaaattttcacgtctggcagataga 301
Query: 484 gatagtgattcaggttgtcacaacaattaagcaagaactcaagatgccattatctccttc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gatagtgattcaggttgtcacaacaattaagcaagaactcaagatgccattatctccttc 241
Query: 544 cagtgtcttaactaggttgccaaggattcccttctt 579
||||||||||||||||||||||||||||||||||||
Sbjct: 240 cagtgtcttaactaggttgccaaggattcccttctt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 980
Length adjustment: 10
Effective length of query: 569
Effective length of database: 970
Effective search space: 551930
Effective search space used: 551930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no473_h02.g1 MSMg01no473_h02.g1 CHROMAT_FILE:
MSMg01no473_h02.g1 PHD_FILE: MSMg01no473_h02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:31 2005
(554 letters)
>mm_chr6_92528523_92529476
Length = 954
Score = 955 bits (494), Expect = 0.0
Identities = 534/562 (95%), Gaps = 25/562 (4%)
Strand = Plus / Plus
Query: 1 ctcttttctagcctgtttttgttatctgaccttttctgatgatgtcttaactttaattac 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ctcttttctagcctgtttttgttatctgaccttttctgatgatgtcttagctttaattac 260
Query: 61 atgtaatcactatgctaatgggaataaatagaggcaactcagttttattatcttgattac 120
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 atgtaatcattatgctaatgggaataaatagaggcaactcagtttcattatcttgattac 320
Query: 121 aggggaaaaaatggtatgatctctcacattgctactgatactttaaagaaacctcatttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggggaaaaaatggtatgatctctcacattgctactgatactttaaagaaacctcatttg 380
Query: 181 caaggaaaaccttgaccaaagacccaaaatccaaagtattccagaatttgcacaccaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaggaaaaccttgaccaaagacccaaaatccaaagtattccagaatttgcacaccaaat 440
Query: 241 tagaaaggaaggtgtgggatacatacatacataca--------aacaaacaataaatatt 292
||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 tagaaaggaaggtgtgggatacatacatacatacatacatacaaacaaacaataaatatt 500
Query: 293 atatatatatatattatatataccatacatatatatgatatatatatatataatatataa 352
|||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 501 atatatatat----tatatataccatacatatatatgatatatata-------------a 543
Query: 353 tcttcatgctgaacttgcacaaaacactgacctcttgagatgcttaatgataaagagcat 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tcttcatgctgaacttgcacaaaacactgacctcttgagatgcttaatgataaagagcat 603
Query: 413 ggcttgtgtagaaagaaaagaaaataaagataaacaaacaaatagaaacagaacctctaa 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ggcttgtgtagaaagaaaagaaaataaagataaacaaacaaatagaaacagaacctctaa 663
Query: 473 ctgctcacactctatcagctttatatcaacatgtggagaagaccacagctctggtgtcag 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ctgctcacactctatcagctttatatcaacatgtggagaagaccacagctctggtgtcag 723
Query: 533 ggtcaagtttcaccacctgcaa 554
||||||||||||||||||||||
Sbjct: 724 ggtcaagtttcaccacctgcaa 745
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
