NNNAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGA
TCCGCGGAATTCCTAAATTTGCACAGAGGAACTCTGTCTAACTTTATTGC
CTGTTTTAAGACCCTTTCCTTCTACTGGGTTTCCTTGTTCAACCTTAATA
GGAGAGTAGGTGCCTGATCTTACTACAGCTTAATATGCCATGGCTAGTTG
ATAACCATTCGAGGCCTGAATTTTCTTAAGAGAAGTGTAGGGGAACTGGA
TGAGGCAGGGGGGTGGACTTGAAGGGAAGAAAGCAGGAGAAACTGCATTC
AGAATGTAATAAATAATAAAGAAACTTATATATATAGTAGAAAAATGTAT
AAAATTCCATCACTTTATTGTCTTTCTTTTAGCAATGAGTTTTACTTGCT
ACTCCATCAGTTTATACATAACTTGTAATTTCACATTTCTTGTAAGTTTG
TATGTTGTAAACATTAGAAAAATATCCAAAGAAAAGTAAGCATCTGTGAG
TTCATAGACTATGCCCTAATTAACCTTGCTTCAACCTAGAGTCACCTGAG
AAGGGAGTTCCAACTGAGGAATTGCCCAGATCAGATTGGACCATAGGCTT
CTCTCTTGTGAATTGTCTTGGATGTCAATTGATATCAGAAGGTCCAGCCT
ATGTTGTTCTGGACTGTATTAGAAAGCTAGCTAAGCATAACCCAGCTGCC
TAGCCAGATATCCATATTCTGGGTGTAGTTTCAGC

AAAATACCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGACGATTGTAATAAGA
AAATGTCTTCTGGACCCAATGAACTTTCAGAAATATATATGTAGGAGATC
TACACAAGATCATACCAGTCAACATGCAAATGCAGCCAGGGGTAAAGTTC
TTTACATCCCAACATCAGGTAAAGACATGTAAGCAGTTGATGGCTGCTGA
TAAAGGGATAAGAATTTTCCCTCAGAGATAAGCCCTAGATAGGTTTCTCA
ACTCCAAGCAGGCAGAATAAACCCATGTACATATGGGCAATATTAATTGG
ACTATCTGTGTGCACCTGACTCACCAGCAAAGCAGACGCCACAACAGGAT
CCTTCTGCACACATTTATTGGGAGAGCTTGATTGCAGAGGCAAAAAGACC
CGAGCCCAGAACTGGTGCTGCTTATATAGACCTAGGAGAGGCATGTCTCA
CACCCAGATTGGTTATGCTTACTACCTCATTTGCATATCTCTCATCTGAT
TGGTTAACATACCTCATTTGCATGTCTCACATCGGATTGGGTATATTCTC
AAAACCTTATCTTGGCGAAAAACTTTACTGCATATGTATGCATGCTAGCC
AGCGCTAGCCAGCGGCACCCTTGCACGGACATGTGGGTTCCCCCACGACT
CCGAAGTTATATTTAACATGGGGATGGAAGCCGGTTAAATGTATGGCCC

Query= MSMg01no473_m19.b1 MSMg01no473_m19.b1 CHROMAT_FILE:
MSMg01no473_m19.b1 PHD_FILE: MSMg01no473_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:02 2005
         (532 letters)



>mm_chr6_78272104_78273030
          Length = 927

 Score =  924 bits (478), Expect = 0.0
 Identities = 517/532 (97%), Gaps = 5/532 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggaactctgtctaactttattgcctgttttaagaccctttccttctactgggtttccttg 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ggaactctgtctaactctattgcctgttttaagaccctttccttctactgggtttccttg 583

                                                                       
Query: 61  ttcaaccttaataggagagtaggtgcctgatcttactacagcttaatatgccatggctag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ttcaaccttaataggagagtaggtgcctgatcttactacagcttaatatgccatggctag 523

                                                                       
Query: 121 ttgataaccattcgaggcctgaattttcttaagagaagtgtaggggaactggatgaggca 180
           ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 522 ttgataaccattcgaggcccgaattttcttaagagaaatgtaggggaactggatgaggca 463

                                                                       
Query: 181 ggggggtggacttgaagggaagaaagcaggagaaactgcattcagaatgtaataaataat 240
            |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 -gggggtggacctgaagggaagaaagcaggagaaactgcattcagaatgtaataaataat 404

                                                                       
Query: 241 aaagaaacttatatatatagtagaaaaatgtataaaattccatcactttattgtctttct 300
           ||| ||    ||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 403 aaacaa----ataaatatagtagaaaaaggtataaaattccatcactttattgtctttct 348

                                                                       
Query: 301 tttagcaatgagttttacttgctactccatcagtttatacataacttgtaatttcacatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tttagcaatgagttttacttgctactccatcagtttatacataacttgtaatttcacatt 288

                                                                       
Query: 361 tcttgtaagtttgtatgttgtaaacattagaaaaatatccaaagaaaagtaagcatctgt 420
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tcttgtaactttgtatgttgtaaacattagaaaaatatccaaagaaaagtaagcatctgt 228

                                                                       
Query: 421 gagttcatagactatgccctaattaaccttgcttcaacctagagtcacctgagaagggag 480
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 227 gagttcatagactatgccctaattaaccttgcttcaacccagagtcacctgagaagggag 168

                                                               
Query: 481 ttccaactgaggaattgcccagatcagattggaccataggcttctctcttgt 532
           |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 167 ttccaactgaggaattgcccagatcagattggaccatagggttctctcttgt 116


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 927
Length adjustment: 10
Effective length of query: 522
Effective length of database: 917
Effective search space:   478674
Effective search space used:   478674
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)