BAC Information

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BAC

Clone NameMSMg01-473O20
Chromosome6 (Build37)
Map Location 10,518,709 - 10,519,024
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC330264
Downstream geneLOC100040285, LOC667650, AA545190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473O20.T7 (MSMg01no473_o20.b1)MSMg01-473O20.TJ (MSMg01no473_o20.g1)
ACCAG556111AG556112
length800784
length of high quality
(start - end)		417 (79 - 495)437 (77 - 513)
definitionCHROMAT_FILE: MSMg01no473_o20.b1 PHD_FILE: MSMg01no473_o20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:12 2005CHROMAT_FILE: MSMg01no473_o20.g1 PHD_FILE: MSMg01no473_o20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCG
CGGAATTCCACTATGATCTCGCAGTGTCCAGAAAAACTTAGCATTATGAA
ATTTGTTTCTAAGAAAATATAGTTTGCACACATCAATGTTTTACCTTTTC
ATTTTCTCATCATATTTTATTTATTTATTTATTTATCTATTTATTTATTT
ATTTTACCTTGGGACTACTTATCAAGTTCACTGGAAAGATTTAAAAATGT
AATCATTAAACTTTATGTACATGTCTATTCTAGCTAAATGACAAACCATC
ACCAAAGCATCCACAAACTTTGAAATAGTGATAAATTAGCAATCTTTTGT
GTTCTGGAGTAATTTGGAACTTGCACAATGGAGTGAATATGAATCTGTGC
TCTATGGCTTCAGTGATAAGAAACAGAGACACTTCTATTTAATTCATTAA
CCACCTACTATAATTAAGGTTATTAATGATCAGTTAATGTTTGTGCTAAT
TTGGGAAAGTGAAAATCGAGAAAAATATATCTCTAGAAATCATTTACAAT
TCCCTTATGTTTGCCCAGACCCTTTTGTCCCTGTCTGTTAAGAAAGGGTC
CCTGGTTGCAATTGGACAACGAGTCTACCCACTGATTACCGAACTAATCT
CTCGCAAAAATTGNTGTAAAATCTCAATGATTGGTTCCATAAATGAACAC
CCTCCCTCATTAAATAAAACACAAATCGTCGCGCTTAAACCTCTTTCTCT
CTATATCATTCTTACTTTCCTCATTACACACCCACAAATGATTTCTCATG


NNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCTCCATTT
TTTAATGAGGTTATTTAATTTTCTGGAGTCTACCTTCTTGAGTTCTTTAT
ATATATTGGATATTAGTCCCCTATCTGATTGAGGATAGGTAAAGATCATT
TCCCAATCTGTTGGTGGACTTTTTGTCTTATTGACGGTGTCTTTTGCCTT
ACAGAAGCTTTGCAATGTTATGAGTTCCCATTTGTCGAATCTCAATCTTA
AAGCACAAGCCATTGCTGTTCTACACAGGAATTTTTCCCCTGTGCCCATA
TCTTTGAGGCTTTTCTCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGG
TTTTATGTGGAGTTTTTTGATCCACTTAGATTTGGCCTTAGTACAAGGAG
ATAGGAATGGATCAATTCACATTCTTCTAGATGATAACCACCAGTTGTGC
CAGCACCATTTGTTTGAAATGCTGTCTTTCTTCCACTGGATGGGTTTAGC
ACCTTTGTCAAAGATCAAGTGATCTTAAGGGTGGGGGTTCATTTCTGGGG
CTTCTTTTCTATTCCCTTGATCCACCTGGCGGTGCTGGCCCCATTACATG
CGCGTTTTTTTACACATTGGTTTGGTTTTTAGTTTTACGCTTATGCGGGG
GGTTCCCCCCCAGACCTCGTTTCTTTTGCATAAATTTCTTCTCCTCTTTT
TCTCTTTTTTCTCCTCCTCTTTTATCTTACTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_o20.b1 MSMg01no473_o20.b1 CHROMAT_FILE:
MSMg01no473_o20.b1 PHD_FILE: MSMg01no473_o20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:12 2005
         (417 letters)



>mm_chr6_10518408_10519224
          Length = 817

 Score =  582 bits (301), Expect = e-170
 Identities = 313/317 (98%), Gaps = 2/317 (0%)
 Strand = Plus / Plus

                                                                       
Query: 102 tatttatctatttatttatttattttaccttgggactacttatcaagttcactggaaaga 161
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tatttatctatttatttatttattttaccttgggactacttatcaagttcactggaaaga 361

                                                                       
Query: 162 tttaaaaatgtaatcattaaactttatgtacatgtct-attctagctaaatgacaaacca 220
           ||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||
Sbjct: 362 tttaaaaatgtaatcattaaactttatgtacatgtctgat-ctagctaaatgagaaacca 420

                                                                       
Query: 221 tcaccaaagcatccacaaactttgaaatagtgataaattagcaatcttttgtgttctgga 280
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcaccaaagcatccacaaactttgaaatagtgataaattagcaatcttttgtgttctgga 480

                                                                       
Query: 281 gtaatttggaacttgcacaatggagtgaatatgaatctgtgctctatggcttcagtgata 340
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 481 gtaatttggaacttgcacaatggagtgaatatgaatatgtgctctatggcttcagtgata 540

                                                                       
Query: 341 agaaacagagacacttctatttaattcattaaccacctactataattaaggttattaatg 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 agaaacagagacacttctatttaattcattaaccacctactataattaaggttattaatg 600

                            
Query: 401 atcagttaatgtttgtg 417
           |||||||||||||||||
Sbjct: 601 atcagttaatgtttgtg 617


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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