Query= MSMg01no474_b18.b1 MSMg01no474_b18.b1 CHROMAT_FILE:
MSMg01no474_b18.b1 PHD_FILE: MSMg01no474_b18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:26 2005
(479 letters)
>mm_chr6_38743096_38743975
Length = 880
Score = 874 bits (452), Expect = 0.0
Identities = 470/476 (98%), Gaps = 1/476 (0%)
Strand = Plus / Minus
Query: 5 gaattctccttt-acgaacagtatttttaagtttgctgactgaatgttggttgggtggga 63
|||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gaattctcctttaatggacagtatttttaagtttgctgactgaatgttggttgggtggga 621
Query: 64 ggtgagaagaaggaaaatgatttacacaggaacttatctctggtgttaaaaatagtcgag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ggtgagaagaaggaaaatgatttacacaggaacttatctctggtgttaaaaatagtcgag 561
Query: 124 ggaatcatatgattgatacacaaatgctgtcctaacacattattttgggaacgatttgat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggaatcatatgattgatacacaaatgctgtcctaacacattattttgggaacgatttgat 501
Query: 184 gctaacatgagatgtggatgaagactagaagcagctagtcctctgacactcccctgggat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gctaacatgagatgtggatgaagactagaagcagctagtcctctgacactcccctgggat 441
Query: 244 catgcccctcatgcagctcttgtattaacaccagacagcagccaccagcttcgaccttct 303
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 440 catgcccctcatgcagctcttggaagaacaccagacagcagccaccagcttcgaccttct 381
Query: 304 agccttgaccttatccccagaccccaaaggtgaggaggtgagaggccaattttttgagac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agccttgaccttatccccagaccccaaaggtgaggaggtgagaggccaattttttgagac 321
Query: 364 cttcccctctctcttttagtctggctgctctcaattgtttctgctattaaaggccaagat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cttcccctctctcttttagtctggctgctctcaattgtttctgctattaaaggccaagat 261
Query: 424 atcatttgctagtagtctcccccagcacaggagaggcctaaaactgataatagtag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atcatttgctagtagtctcccccagcacaggagaggcctaaaactgataatagtag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 880
Length adjustment: 10
Effective length of query: 469
Effective length of database: 870
Effective search space: 408030
Effective search space used: 408030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no474_b18.g1 MSMg01no474_b18.g1 CHROMAT_FILE:
MSMg01no474_b18.g1 PHD_FILE: MSMg01no474_b18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:26 2005
(530 letters)
>mm_chr6_38557337_38558266
Length = 930
Score = 975 bits (504), Expect = 0.0
Identities = 523/535 (97%), Gaps = 10/535 (1%)
Strand = Plus / Plus
Query: 1 acttgaatagngaaccagatttttaaattagcaaatggttatttaaagccatattaagta 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttgaatagtgaaccagatttttaaattagcaaatggttatttaaagccatattaagta 260
Query: 61 gttctcttacctagtttgcaacatactgcccataggacaaatgtggccgaagcctgtttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttctcttacctagtttgcaacatactgcccataggacaaatgtggccgaagcctgtttg 320
Query: 121 tataaaaccagaaagctatggatggttttccatttctgtcatttttaaagttgatagaaa 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 tataaaaccagaaagctatggatggttttgcatttctgtcatttttaaagttgatagaaa 380
Query: 181 agaataactcatacaccctgatcttgtaatttacaacacttcaaatccttatttagcact 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaataactcatacaccctgatcttgtaatttacaacacttcaaatccttatttagcac- 439
Query: 241 tttta-----tgactgctgtacaaattcattggtttccatccaatttggaatcttgatac 295
| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ----aagagatgactgctgtacaaattcattggtttccatccaatttggaatcttgatac 495
Query: 296 ttttcacttataaaagcaattacttatatattgtttttatactaaatgcctttttattag 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ttttcacttataaaagcaattacttatatattgtttttatactaaatgcctttttattag 555
Query: 356 ttgaagaaactttatctctgaaatactaagaatacattgtttagtttaggctcttttgcc 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ttgaagaaactttatctctgaaatactaagaatacattgtttagtttaggctcttttgcc 615
Query: 416 cttaactgtatagctatttgttcttcccaattttgttttggtgcccttttcagctgtata 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 cttaactgtatagctatttgttcttcccaattttgttttggtgcccttttcagctgtata 675
Query: 476 gtaggactctattctataagaaactctcttctcagatatattcttacctatttct 530
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gtaggactctattctataagaaactctcttctcagatatattcttacctatttct 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
