BAC Information

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BAC

Clone NameMSMg01-474F05
Chromosome6 (Build37)
Map Location 68,662,649 - 68,663,140
singlet/doubletsinglet
Overlap geneIgk, Igkv2-93-1
Upstream geneIgkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550
Downstream geneIgkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077, Igkv13-57-2, Gm1418, Igkv13-57-1, Gm189, Igkv13-56-1, Igkv4-56, Igkv13-55-1, Gm1524, Igkv13-54-1, Igkv4-54, Gm1420, Igkv4-51, Gm1069
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474F05.T7 (MSMg01no474_f05.b1)MSMg01-474F05.TJ (MSMg01no474_f05.g1)
ACCAG556414AG556415
length740743
length of high quality
(start - end)
553 (46 - 598)492 (76 - 567)
definitionCHROMAT_FILE: MSMg01no474_f05.b1 PHD_FILE: MSMg01no474_f05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:44 2005CHROMAT_FILE: MSMg01no474_f05.g1 PHD_FILE: MSMg01no474_f05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:44 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTACCTCTGTACTCCATTTTTAATGGGGTTATTTGAATTT
CTGGAGTCCAGCTTCTTGAGCTCTTTGTATATATTGGATATTAGACCCCT
ATCAGATTTAGGATTGGTAAAAGTCCTTTCCCAATCTGTTGGTGGCCTTT
TTGTCTTATTGACAGTGTATTTTGCCTTACAGAAGCTTTGCAATTTCATA
AGGTCCCATTTGTCAATGTTTTTAATATTTTTTATTACATATTTTTCTCA
ATTACATTTCCAATGCTATTCCAACAATCCCCCATAGCATCCCCCACACT
TCCCCACCCACCCATTCCCATTTTTTTGGCCCTGGCGTTCCCCTGTACTG
GGGCATATACAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCT
GGCTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGG
TACTGGTTAGTTCATAATGTTATTCCACCTATAGGGTTGCAGATCCCTTT
AGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCA
TCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGACCCGGCA
TAGTCTTCCAAGAGACAGCTTATATCTGGGGTCTTTCCGCAAAATTCTTG
CCAGCGGTTGCAATGGTGGCCGTGTTTGTGAAGCTGAATA
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAACCAGGGATGGGACCTGGATGCAG
GAACTGATACAGAGAATATGAAGGGATTTTACTGACTGGCTTGCTCCACA
TTTGTTTGTTCAGCTAGTATTTTTATGAAACATAGGTTTACCAGCACAGG
GATAGCACAATCCAAAATGGCCAACTGCTATTGATCACTAATTGATAAAA
TGCCTTACATCTGGATCCCATGGAAACATTTCGTCAAGGATGCTCCTTTA
TCTCTGATGACTCTAGCTTGTATCAAGCTGACACACAAAAATAATCTGTA
CAGACAATACATCAGGAGCTCTGGAGCCTTCCTGACATTGAAAGAACCAT
TGCAAATAAGTATTGGCATCACTGTGTAACAGATCTTTACAAGACCTGAA
GGAGATGGAAGCTGACACTGTAGAAGTGACAGGTATGGAGAATGCAGCCT
GTGTCATCACCAGTGTCTCTAGATATATCAGAATTAAAGGGCCATGCACA
AACATTTTGATACTTTCAAGTGATTTTTCTTCCTTTATTTCCTACTTGTT
TTTTTTTCATGACTTTCATTTATATCCCCAAAGTTTCCCACATAAAAGAT
CTATATTAAGAAAACCTGGAGGCTTTGCTAGAAAATATCGGGATTATCCA
GTTTGGTACCCGCAAGAGTTATCCCCAGAGAAAGGGATTGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_f05.g1 MSMg01no474_f05.g1 CHROMAT_FILE:
MSMg01no474_f05.g1 PHD_FILE: MSMg01no474_f05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:44 2005
         (492 letters)



>mm_chr6_68662448_68663340
          Length = 893

 Score =  712 bits (368), Expect = 0.0
 Identities = 464/496 (93%), Gaps = 8/496 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaccagggatgggacctggatgcagga-actgatacagagaatatgaag-ggattttact 58
           ||||||||| | ||||||||||||||| | ||| |||||||||||| || ||||| ||||
Sbjct: 202 aaccagggaagagacctggatgcaggaga-tgacacagagaatatg-agaggattgtact 259

                                                                       
Query: 59  gactggcttgctccacatttgtttgttcagctagtatttttatgaaacataggtttacca 118
           |||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 260 gactggcttgatccacatttgtttgctcagctagtatttttatgaaacataggttcacca 319

                                                                       
Query: 119 gcacagggatagcacaatccaaaatggccaactgctattgatcactaattgataaaatgc 178
           |||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 320 gcacagggttagcacaatccaaaatgaccaactgctattgatcactaactgataaaatgc 379

                                                                       
Query: 179 cttacatctggatcccatggaaacatttcgtcaaggatgctcctttatctctgatgactc 238
           || ||||||||||||||||||  |||||| | ||||||||||||||||||||||||||||
Sbjct: 380 ctcacatctggatcccatggaggcatttccttaaggatgctcctttatctctgatgactc 439

                                                                       
Query: 239 tagcttgtatcaagctgacacacaaaaataatctgtacagacaatacatcaggagctctg 298
           |||||||| |||||||||||||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 440 tagcttgtgtcaagctgacacacaaaa-taatctgtatagacagtacatcaggagctctg 498

                                                                       
Query: 299 gagcct-tcctgacattgaaagaaccattgcaaataagtattggcatcactgtgtaacag 357
           |||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 499 gagcctctcctgtcattgaaagaaccattgcaaataaggattggcatcactgtgtaacag 558

                                                                       
Query: 358 atctttacaagacctgaaggagatggaagctgacactgtagaagtgacaggtatggagaa 417
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 agctttacaagacctgaaggagatggaagctgacactgtagaagtgacaggtatggagaa 618

                                                                       
Query: 418 tgcagcct-gtgtcatcaccagtgtctctagatatatcagaattaaagggccatgcacaa 476
            ||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 619 agcagcctag-gtcatcaccagtgtctctagatataacagaattaaagggccatgcacaa 677

                           
Query: 477 acattttgatactttc 492
           ||||||||||| ||||
Sbjct: 678 acattttgatattttc 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 893
Length adjustment: 10
Effective length of query: 482
Effective length of database: 883
Effective search space:   425606
Effective search space used:   425606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)