BAC Information

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BAC

Clone NameMSMg01-474F21
Chromosome6 (Build37)
Map Location 42,247,749 - 42,435,523
singlet/doubletdoublet
Overlap geneClcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457
Upstream geneTry4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2
Downstream geneOlfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474F21.T7 (MSMg01no474_f21.b1)MSMg01-474F21.TJ (MSMg01no474_f21.g1)
ACCAG556446AG556447
length733737
length of high quality
(start - end)		503 (69 - 571)469 (75 - 543)
definitionCHROMAT_FILE: MSMg01no474_f21.b1 PHD_FILE: MSMg01no474_f21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:48 2005CHROMAT_FILE: MSMg01no474_f21.g1 PHD_FILE: MSMg01no474_f21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,435,038 - 42,435,523)(42,247,749 - 42,248,214)
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCANAGATCCGCGGA
ATTCTGTTTCTCTCCCAGAAGCAATTTAACAAATACCAAAATGAGTAAGT
TCCAATCAGAGATAGTAAAACGAAACAGCAATGATCTGTTATTAACAAAC
ATTTTACAACAACTTTTAAAAACCATTAATTATTTAAAAATTAAATAATT
AAAAATAACATATCTCTCATTTGTGTTTTCAACAAAACCAAGAAATACTT
CAGCATAATTTTAGGACAGTTCAAACTTTTACTCCATGCATTGGGAACAG
TTTGAGTAAAGGAACAAGATAGAGCCAAACAGATATTAAGTTTCTAGTGA
AACTTTTGTTTCAGTGACATTCAGCTTTCCCACAAGGTCATACAACCTCA
CATCTTTCCACCTTTAGACCATTCTTATACCCACAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAACCCCCAATTGCAACAAGGCAGCCAAGCT
TTCTACCAGTTCCTAAAAATCCACTGCAGTGCTTTTCATCTATGAACCTG
TCAACTTTGAGTCTTTTCAATAAACACGCCAGTAAAGGTGGTTCCCAACT
AATTGGATCTGAATTTTTCACTTAGGGTGTTTTCTGTGCTCTATCACTGT
GGTAATTTGGGTTGTTTTACTTCTTTCAGGCTAAATCAAAAACAAACTCA
CAGCTGGAAAAAACAACTCAGCTGCTACAGGTT

NCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTATCAAGTGAGCTGCTGTCTGAATA
CAAAGGGAATGGCCAGCCCTGAGCAGACCAACAAAGTACACCATGAGAAA
AGGACAAAGTCTGCCCTGTTTATGTTTTGTTTTTCCTATTGGGCTGGTCC
TCAGCTCCATCTCAGTTCTCTGACCTCCTGTTTGATACAGAAGAGGCTTA
GCTAAGGTTTAGGTCAGGTCATTGATGACCTAATCAAAGATCAACTCCCT
TATCCTGAAGCTTACAGATTTTCTAAAGCTTCCCTTTGTTGTTGCAAATG
GTGCTTTTCTGGCCTCGCTGGTGTTGCTGCCTTTGGCGCAGCATCTTGTA
TATGTTACATTTGCCCTCCTCGTTTTAAGCTTGAGCCTCTCCCCTCAGAA
CAAGAACTAGTGACTACTAGCTGCCATTCCTATTTACCTCACTCACCCTG
CTAAGCATAATGGTTTACCTTCTCACCCTGGCTATCCTGGCTTTAGACCT
TGTGAGCTACCTTTTGTATTGTCATCCCTGTTAGAACATTCCTCTTGCTT
CTTTTTCTCAAATATTGAACCTGTTGATGGGCAAAAAGCCCATCCCGGCT
TTCTAATTTCCAAAAATTGCCCTGGGAAAAAGAGAAAAAGGAAAAGCCAA
GGTTGTCCAGAAAATTTAAACCCTGAACTCTTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_f21.b1 MSMg01no474_f21.b1 CHROMAT_FILE:
MSMg01no474_f21.b1 PHD_FILE: MSMg01no474_f21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:48 2005
         (503 letters)



>mm_chr6_42434818_42435720
          Length = 903

 Score =  864 bits (447), Expect = 0.0
 Identities = 481/503 (95%), Gaps = 17/503 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagcaatttaacaaataccaaaatgagtaagttccaatcagagatagtaaaacgaaacag 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 706 aagcaatttaacaaataccaaaatgagtgagttccaatcagagatagtaaaacgaaacag 647

                                                                       
Query: 61  caatgatctgttattaacaaacattttacaacaacttttaaaaaccattaattatttaaa 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 cgatgatctgttattaacaaacattttacaacaacttttaaaaaccattaattatttaaa 587

                                                                       
Query: 121 aattaaataattaaaaataacatatctctcatttgtgttttcaacaaaaccaagaaatac 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 586 aattaaataattaaaaataacatatctctcatttgtgttttcaacaaaacaaagaaatac 527

                                                                       
Query: 181 ttcagcataattttaggacagttcaaacttttactccatgcattgggaacagtttgagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ttcagcataattttaggacagttcaaacttttactccatgcattgggaacagtttgagta 467

                                                                       
Query: 241 aaggaacaagatagagccaaacagatattaagtttctagtgaaacttttgtttcagtgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 aaggaacaagatagagccaaacagatattaagtttctagtgaaacttttgtttcagtgac 407

                                                                       
Query: 301 attcagctttcccacaaggtcatacaacctcacatctttccacctttagaccattcttat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 attcagctttcccacaaggtcatacaacctcacatctttccacctttagaccattcttat 347

                                                                       
Query: 361 acccacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacccccaattgcaacaa 420
           |||||||||||||||||||||||| |||                 || ||||||||||||
Sbjct: 346 acccacaaaaaaaaaaaaaaaaaacaaa-----------------ccacaattgcaacaa 304

                                                                       
Query: 421 ggcagccaagctttctaccagttcctaaaaatccactgcagtgcttttcatctatgaacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ggcagccaagctttctaccagttcctaaaaatccactgcagtgcttttcatctatgaacc 244

                                  
Query: 481 tgtcaactttgagtcttttcaat 503
           |||||||||||||||||||||||
Sbjct: 243 tgtcaactttgagtcttttcaat 221


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no474_f21.g1 MSMg01no474_f21.g1 CHROMAT_FILE:
MSMg01no474_f21.g1 PHD_FILE: MSMg01no474_f21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:48 2005
         (469 letters)



>mm_chr6_42247546_42248414
          Length = 869

 Score =  855 bits (442), Expect = 0.0
 Identities = 460/466 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   tcaagtgagctgctgtctgaatacaaagggaatggccagccctgagcagaccaacaaagt 63
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 204 tcaagtgagctgctgtctgaatacagagggaatggccagccctgagcagaccaacaaagt 263

                                                                       
Query: 64  acaccatgagaaaaggacaaagtctgccctgtttatgttttgtttttcctattgggctgg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acaccatgagaaaaggacaaagtctgccctgtttatgttttgtttttcctattgggctgg 323

                                                                       
Query: 124 tcctcagctccatctcagttctctgacctcctgtttgatacagaagaggcttagctaagg 183
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 324 tcctcagctccatctcagttctctgacctcctgcttgatacagaagaggcttagctaagg 383

                                                                       
Query: 184 tttaggtcaggtcattgatgacctaatcaaagatcaactcccttatcctgaagcttacag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 384 tttaggtcaggtcattgatgacctaatcaaagatcaactcccttatcctaaagcttacag 443

                                                                       
Query: 244 attttctaaagcttccctttgttgttgcaaatggtgcttttctggcctcgctggtgttgc 303
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atttcctaaagcttccctttgttgttgcaaatggtgcttttctggcctcgctggtgttgc 503

                                                                       
Query: 304 tgcctttggcgcagcatcttgtatatgttacatttgccctcctcgttttaagcttgagcc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgcctttggcgcagcatcttgtatatgttacatttgccctcctcgttttaagcttgagcc 563

                                                                       
Query: 364 tctcccctcagaacaagaactagtgactactagctgccattcctatttacctcactcacc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tctcccctcagaacaagaactagtgactactagctgccattcctatttacctcactcacc 623

                                                         
Query: 424 ctgctaagcataatggtttaccttctcaccctggctatcctggctt 469
            |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 624 ttgctaagcataatggtttactttctcaccctggctatcctggctt 669


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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