Query= MSMg01no474_m23.b1 MSMg01no474_m23.b1 CHROMAT_FILE:
MSMg01no474_m23.b1 PHD_FILE: MSMg01no474_m23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:23 2005
(615 letters)
>mm_chr6_51952696_51953710
Length = 1015
Score = 1106 bits (572), Expect = 0.0
Identities = 602/612 (98%), Gaps = 2/612 (0%)
Strand = Plus / Plus
Query: 5 gaattctagatccgttcctcaatattcctctcagcagggggagctagcactctcatcttg 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctagatccgtttctcaatattcctctcagcagggggagctagcactctcatcttg 264
Query: 65 aaggtctaaacacataccatggaacttaaaattttgattccaactataaaatttcagaac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaggtctaaacacataccatggaacttaaaattttgattccaactataaaatttcagaac 324
Query: 125 ggtgagactacccttttcaaaatctccaccaaagaacattatttaagatttgaaatttac 184
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 325 ggtgagactacccttttcaaaatctccaccaaagaaaattatttaagatttgaaatttac 384
Query: 185 ctttgtcttgaaattcctgaagatagctgcaaaaataaagaaaaatcaaggcaaggtcta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctttgtcttgaaattcctgaagatagctgcaaaaataaagaaaaatcaaggcaaggtcta 444
Query: 245 attagtaacaatatttcaaatccaaactctgtattacaaacatacatctaggaaaaaaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 445 attagtaacaatatttcaaatccaaactctgtattacaaacatacatctag-aaaaaaaa 503
Query: 305 acattttctgtcctgaaatgacaattcccaaaggcttacagagtcataatacatacaatt 364
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 504 acattttctgtcctgaaatgacaattcctaaaggcttacagagtcataatacatacaatt 563
Query: 365 aagtatgtaaaaaaagaatttttatcaagatctaataatagaacatatctttattatctt 424
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 564 aagtatgtaaaaaaagaatttttatcaagacctaataatagaacatatctttattatctt 623
Query: 425 tattaatttatttgtttacttagtcaatgcactaaacatttaaaggattttctttttcaa 484
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 624 tattaatttatttgtttacttaatcaatgcactaaacatttaaaggattttctttttcaa 683
Query: 485 agtctggggtattttccacatagatactaaaatttccaaatatgtcctcagatgctcaaa 544
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 684 agtctggggtattttccacatagatattaaaatttccaaatatgtcctcagatgttcaaa 743
Query: 545 ataaatgcttagcattttgctagcatacttagaaaaaaatatataacaatcaacaaaaag 604
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 744 ataaatgcttagcattttgctagcatacttagaaaaaaatatataataatcaacaaaaag 803
Query: 605 gat-atctacat 615
||| ||||||||
Sbjct: 804 gattatctacat 815
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no474_m23.g1 MSMg01no474_m23.g1 CHROMAT_FILE:
MSMg01no474_m23.g1 PHD_FILE: MSMg01no474_m23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:23 2005
(461 letters)
>mm_chr6_52139942_52140801
Length = 860
Score = 868 bits (449), Expect = 0.0
Identities = 458/461 (99%), Gaps = 1/461 (0%)
Strand = Plus / Minus
Query: 1 cactttaaccgctacctgacccggcggcgccgcatcgagatcgcccacacgctctgcttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 cactttaaccgctacctgacccggcggcgccgcatcgagatcgcccacacgctctgcttg 601
Query: 61 tcggagcgccaggtcaagatctggtttcagaaccggagaatgaagtggaagaaagaccac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tcggagcgccaggtcaagatctggtttcagaaccggagaatgaagtggaagaaagaccac 541
Query: 121 aaacttcccaacaccaagatgcgatcttccaacactgcctcggcccctgccggcccgcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 aaacttcccaacaccaagatgcgatcttccaacactgcctcggcccctgccggcccgcct 481
Query: 181 gggaaagcacaaactcacagcccacacccccatccccaccctctccctggtgcttccaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gggaaagcacaaactcacagcccacacccccatccccaccctctccctggtgcttccaca 421
Query: 241 cccattctcttcctccatataatctagagacctggatcagtttctctcacttatgtgccc 300
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 cccattccct-cctccatataatctagagacctggatcagtttctctcacttatgtgccc 362
Query: 301 tactcatctcctgctcctgtcctcatctgctcttccctaagtaaacccgagacaccaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tactcatctcctgctcctgtcctcatctgctcttccctaagtaaacccgagacaccaaaa 302
Query: 361 caaaatccaacttgctggaaaccataaccaaaaagaagacattatccctggttggtgtga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caaaatccaacttgctggaaaccataaccaaaaagaagacattatccctggttggtgtga 242
Query: 421 cccctccaagaggacgtctgtcctcatcctcgttactgctt 461
||||||||||||||||||||||||| |||||||||||||||
Sbjct: 241 cccctccaagaggacgtctgtcctcgtcctcgttactgctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 860
Length adjustment: 10
Effective length of query: 451
Effective length of database: 850
Effective search space: 383350
Effective search space used: 383350
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
