BAC Information

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BAC

Clone NameMSMg01-474P24
Chromosome6 (Build37)
Map Location 86,339,223 - 86,339,702
singlet/doubletsinglet
Overlap genePcyox1
Upstream geneNoto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4, Alms1, LOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg
Downstream geneTia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474P24.T7 (MSMg01no474_p24.b1)MSMg01-474P24.TJ (MSMg01no474_p24.g1)
ACCAG556929AG556930
length739736
length of high quality
(start - end)
468 (50 - 517)480 (77 - 556)
definitionCHROMAT_FILE: MSMg01no474_p24.b1 PHD_FILE: MSMg01no474_p24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:38 2005CHROMAT_FILE: MSMg01no474_p24.g1 PHD_FILE: MSMg01no474_p24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTTCACTTTCCCAGGTGTGGTGATGCACACTCTTAATCCT
AGCACTTGGAAGGCAGAGGCAGGTGAATGATTTCTGTGAGTCTGAGGCCA
GCCTGGTCTACAGAGAGTTACACAACAACCAGGGCTACATACAGAGAGAC
CCTGTCTCAAAAACACAAAATAACAAAAAGATACTTTTTGTTCTGATCCT
TCCCAACCTCTGCCTTTTTTTTTTTTTTTTTGACTTACTTATTATATGTA
AGTACACTATAGCTGTCTTCAGACACTCCAGAAGAGGGCGCCAGATCTTG
GATGGTTGTGAGCCACAATGTGGTTGCTGGGACTTGAACTCAGGACCTTC
AGAAGAGCAGTCAGTCAGTGCTCTTAACTGCTGAGCCATCTCTCCAGCAC
CCCCAACTGCTGCTCTTAAGAGTCTTTCTATCCTATCTTATTTGATGACC
TTTTAGTGACCTGAGACATGCTGTCTGGGATTTTATTATTTATTATTTTA
TTTTATTTATTTTAAGGGTATATGTTTTGANTGNNNNNNNNNNNNNNNNN
NNTNNNNNTTNNTTTNATTTCTCCTTTTTTGTNTTTNTNTTTTNTTTTCT
GTTTTTTTTTTTTNTTTTTTCTTNNTCTCTCTCCCTCNCTTTTCTCCCTT
TCTCTTTCTTTTCCTTCCCTCTTTTTTCCTCCTTCCTCC
NNNCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCGATGGGCGGATCAAAATTTCG
GAAAGTTATGTTGGACATCTTCCGGTTCAAAGGAGCAGCCACGAGGACAA
TGTCATAGAAGTCAGAATGGGTCTCAGATCCTGTTTTATATACCACTTCA
TACATCTTGGTGGGGTTTCCTAGAGGGCATGGTAAAACATGCAGTTTTTA
GTGCTTCTAACACTTAATTTCAGGCCTTCTACAAATAATTCTGCAGCATT
CTTGGTCTTCTTTGTGTACACGTATAAGAGTGTGTCTGTATTTGGAGGTC
AGAGGCTAACCTCAAGTGTCACCCCCAGGAGTTACCCATCTTGAATTCTG
TCTTTCTCTTTTTTTCAAGATTTATTTATTTGGGCTGGAGAGATGGCTCA
GCAGTTAAGAATGCTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCA
GGAACCACATAGTGGCTCACAACCATCAATAATGGGATCTGATGCCCTCT
TCTGGTGTGTCTAAAGACAGCTACAGTGTGTACTTTTTTTTTTTTAGGAA
TTATTTATATGNATATGGAGNTCCCCCTGCATGTGTGCCTGCNTGCCACA
AAAGGTACCAAATCTCCTTATAGATGGGTATGAGCCACCTATGGGCGCCG
GGAATTTAATCCCGGACTTCGGAAAAAAAAAAAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_p24.g1 MSMg01no474_p24.g1 CHROMAT_FILE:
MSMg01no474_p24.g1 PHD_FILE: MSMg01no474_p24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:38 2005
         (480 letters)



>mm_chr6_86339023_86339902
          Length = 880

 Score =  905 bits (468), Expect = 0.0
 Identities = 477/480 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcgatgggcggatcaaaatttcggaaagttatgttggacatcttccggttcaaaggagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcgatgggcggatcaaaatttcggaaagttatgttggacatcttccggttcaaaggagc 260

                                                                       
Query: 61  agccacgaggacaatgtcatagaagtcagaatgggtctcagatcctgttttatataccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agccacgaggacaatgtcatagaagtcagaatgggtctcagatcctgttttatataccac 320

                                                                       
Query: 121 ttcatacatcttggtggggtttcctagagggcatggtaaaacatgcagtttttagtgctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcatacatcttggtggggtttcctagagggcatggtaaaacatgcagtttttagtgctt 380

                                                                       
Query: 181 ctaacacttaatttcaggccttctacaaataattctgcagcattcttggtcttctttgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaacacttaatttcaggccttctacaaataattctgcagcattcttggtcttctttgtg 440

                                                                       
Query: 241 tacacgtataagagtgtgtctgtatttggaggtcagaggctaacctcaagtgtcaccccc 300
           |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 tacacgtacaagagtgtgtctgtatttggaggccagaggctaacctcaagtgtcaccccc 500

                                                                       
Query: 301 aggagttacccatcttgaattctgtctttctctttttttcaagatttatttatttgggct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggagttacccatcttgaattctgtctttctctttttttcaagatttatttatttgggct 560

                                                                       
Query: 361 ggagagatggctcagcagttaagaatgctgactgctcttccagaggtcctgagttcaatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggagagatggctcagcagttaagaatgctgactgctcttccagaggtcctgagttcaatt 620

                                                                       
Query: 421 cccaggaaccacatagtggctcacaaccatcaataatgggatctgatgccctcttctggt 480
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cccaggaaccacatggtggctcacaaccatcaataatgggatctgatgccctcttctggt 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)