BAC Information

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BAC

Clone NameMSMg01-475A06
Chromosome6 (Build37)
Map Location 145,181,679 - 145,342,418
singlet/doubletdoublet
Overlap geneKras, LOC100039495, LOC100042866, LOC546917, 1700073E17Rik
Upstream gene4933425H06Rik, EG665149, Bcat1, Lrmp, Casc1, Lyrm5
Downstream geneIfltd1, LOC100042879, Tuba3b, Rassf8, Bhlhb3, Sspn, Itpr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475A06.T7 (MSMg01no475_a06.b1)MSMg01-475A06.TJ (MSMg01no475_a06.g1)
ACCAG556941AG556942
length754733
length of high quality
(start - end)		249 (78 - 326)432 (83 - 514)
definitionCHROMAT_FILE: MSMg01no475_a06.b1 PHD_FILE: MSMg01no475_a06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:39 2005CHROMAT_FILE: MSMg01no475_a06.g1 PHD_FILE: MSMg01no475_a06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,342,170 - 145,342,418)(145,181,679 - 145,182,110)
sequence
NCCCCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAAATGCG
CGGAATTCCTGCATGATTGCCTGAGCAGTCCATGTGGGAGTTCTTCAGCA
ATCTGGCAGTGATGCAGGCACTCTGAACAGACTTGCAGAGGCGCACGTCT
CTCAGTCCGACTATCAGGGTGTTGAAACAACAGACCCCAGCCAGATAAAT
GAGAATTTTCCAGGAAGCTCATGCTAGTCAATGGAACCGGCACCAGCCAG
AGGGGAAACTTATCTCTTGGAGAAAGATTTCACACAGATCTAACAACTCA
TAAGACCAATGTACAGGATGAGACTCTTTTTTTTACAAGGCTGGGTCCAT
ACTGGGCAGGGCCACATCTTGACCAGGACTAGTTAGATATACATATTTCT
AGCCCTCTATTTAGACTGGGACTTCACTTCATGACCCCAAAGAACTAAGG
GAATGTTGCTGGATGTCTTTGTCCCTCTCCCCATGTGGCCACATTGAATA
AACCACCTTCCTCTGCCTCACACCTTTAACTTCGCTCTTTTTTTTTATTA
CTGGCTTCTTGAGTATGGGTTGGTCAACCTGATTTAGGGGGTGTGACCCC
TAAGCTGATAACTGGACTGAGAGCTTTACATGTACGAGAGTTTTTACCCA
GAATGCTGCACAATCTTTGTTTTTTCCCCAGTCAGAGAAAACTGGTAATT
GCTGTTGGTGTTTTTCTTGCTTTACTATCCCCCCTTTATTCCTTCGTTGT
TCTC

TTCCTCCCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTGCCAGTGCAGGCCA
AAAGTATTGAATTCCCTGGAGATAGAGTTACATGTGGTTAGGAGATGCCT
TAAATGGACATTCACCTGGAATTAACTTTGGTCTTCTGGAAAAGCAACAT
AGTCAATAATTGCTGAGCCATTTCTCCAGCCCTGAAGACTGATTTTTTTT
TTTTAAGAGCAACACTAAAGGGAATACAATATGTATTCTGTGCAAAGTCT
TTTTTATGTTTTGTTGTCAATGCAATGTATAAATAAATTCTAAATTTGGG
GAAAAATGTATTTCTTCCCAATTTCTGTGGATATCCAAGATGCTGATTGG
AAGGTTCATATCCCCAGATCTTCCATGAGCAAAGTTCACCTGAACACCTA
CAGAAAAGTACTCTCCCAACCCCTTCTCCCTANACCCATGCCACTACTCG
TAATGAAGATGCTACACTTAACCAGGCTAACACCCATTATAATGCACAGC
CCGCAAAAAGGATATTTGCCTTCTAAATACTGCCCCCAACACTGATTACC
ATTCTGGTAACAATGCCCCAAACCCTTTCCCATTCCGCACCTTTTACCCC
TACGGTCCCTTTTTCCCCACTCCTTTATTATACCAGCCCCGCAACCGTTT
TTTTTTCCCTCCCTTCTTTTTTCCACTCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_a06.b1 MSMg01no475_a06.b1 CHROMAT_FILE:
MSMg01no475_a06.b1 PHD_FILE: MSMg01no475_a06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:39 2005
         (249 letters)



>mm_chr6_145341970_145342618
          Length = 649

 Score =  474 bits (245), Expect = e-138
 Identities = 248/249 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtccatgtgggagttcttcagcaatctggcagtgatgcaggcactctgaacagacttgca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 449 gtccatgtgggagttcttcagcaatctggcagtgatgcaggcactctgaagagacttgca 390

                                                                       
Query: 61  gaggcgcacgtctctcagtccgactatcagggtgttgaaacaacagaccccagccagata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gaggcgcacgtctctcagtccgactatcagggtgttgaaacaacagaccccagccagata 330

                                                                       
Query: 121 aatgagaattttccaggaagctcatgctagtcaatggaaccggcaccagccagaggggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aatgagaattttccaggaagctcatgctagtcaatggaaccggcaccagccagaggggaa 270

                                                                       
Query: 181 acttatctcttggagaaagatttcacacagatctaacaactcataagaccaatgtacagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 acttatctcttggagaaagatttcacacagatctaacaactcataagaccaatgtacagg 210

                    
Query: 241 atgagactc 249
           |||||||||
Sbjct: 209 atgagactc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no475_a06.g1 MSMg01no475_a06.g1 CHROMAT_FILE:
MSMg01no475_a06.g1 PHD_FILE: MSMg01no475_a06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:39 2005
         (432 letters)



>mm_chr6_145181479_145182310
          Length = 832

 Score =  814 bits (421), Expect = 0.0
 Identities = 429/432 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtgccagtgcaggccaaaagtattgaattccctggagatagagttacatgtggttagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtgccagtgcaggccaaaagtattgaattccctggagatagagttacatgtggttagg 260

                                                                       
Query: 61  agatgccttaaatggacattcacctggaattaactttggtcttctggaaaagcaacatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatgccttaaatggacattcacctggaattaactttggtcttctggaaaagcaacatag 320

                                                                       
Query: 121 tcaataattgctgagccatttctccagccctgaagactgattttttttttttaagagcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaataattgctgagccatttctccagccctgaagactgattttttttttttaagagcaa 380

                                                                       
Query: 181 cactaaagggaatacaatatgtattctgtgcaaagtcttttttatgttttgttgtcaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactaaagggaatacaatatgtattctgtgcaaagtcttttttatgttttgttgtcaatg 440

                                                                       
Query: 241 caatgtataaataaattctaaatttggggaaaaatgtatttcttcccaatttctgtggat 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caacgtataaataaattctaaatttggggaaaaatgtatttcttcccaatttctgtggat 500

                                                                       
Query: 301 atccaagatgctgattggaaggttcatatccccagatcttccatgagcaaagttcacctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atccaagatgctgattggaaggttcatatccccagatcttccatgagcaaagttcacctg 560

                                                                       
Query: 361 aacacctacagaaaagtactctcccaaccccttctccctanacccatgccactactcgta 420
           |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 561 aacacctacagaaaagtactctcccaaccccttctccctaaacccatgcaactactcgta 620

                       
Query: 421 atgaagatgcta 432
           ||||||||||||
Sbjct: 621 atgaagatgcta 632


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space:   348129
Effective search space used:   348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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