Query= MSMg01no475_e17.b1 MSMg01no475_e17.b1 CHROMAT_FILE:
MSMg01no475_e17.b1 PHD_FILE: MSMg01no475_e17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:01 2005
(244 letters)
>mm_chr6_127900588_127901231
Length = 644
Score = 371 bits (192), Expect = e-107
Identities = 230/246 (93%), Gaps = 9/246 (3%)
Strand = Plus / Minus
Query: 1 ccagtggcccttagtccatccatgtgtgggtgggagctcatctctctccaacaattgacc 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ccagtggcccttagtccacccatgtgtgggtgggagctcatctctctccaacaattgacc 520
Query: 61 cagctcagcaggatctggggtcaccacagtgagaactgagccaggtagatgaccagttgg 120
||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 519 cagatcagcaggatctggggtcaccacagtgagaactgagccaggtagacaaccagttgg 460
Query: 121 gcgctttttg-tcaacaagac-gctgctggttcatgtcagaactgaggtttgttattgta 178
| ||||||| | | | |||||||||||||||| |||||||||||||||||||||
Sbjct: 459 acactttttgct------g-ctgctgctggttcatgtcggaactgaggtttgttattgta 407
Query: 179 gagagatgagcaggacccaagcagggaagactgaagctaggagtggagccctggtgtgca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gagagatgagcaggacccaagcagggaagactgaagctaggagtggagccctggtgtgca 347
Query: 239 aagctg 244
||||||
Sbjct: 346 aagctg 341
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no475_e17.g1 MSMg01no475_e17.g1 CHROMAT_FILE:
MSMg01no475_e17.g1 PHD_FILE: MSMg01no475_e17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:01 2005
(280 letters)
>mm_chr6_127685907_127686586
Length = 680
Score = 480 bits (248), Expect = e-140
Identities = 267/280 (95%), Gaps = 11/280 (3%)
Strand = Plus / Plus
Query: 1 gaggaggcattgcccagagattttgctttctaaatgctgagacctttagcaccctcccca 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 212 gaggaggcattgcccagagattttgctttctaaacgctgagacctttagcaccctcccca 271
Query: 61 gaggcttcaataaaacacacttgacaaaaaaaaaaaaaaaagaaagaaagaaagctcaaa 120
||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 272 gaggcttcaataaaacacacttgacaaaaaaaaaa-----------aaagaaagctcaaa 320
Query: 121 cacaaaagaggtgaattcccttcgagtgggagacaagaaattctagcagagttggctatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacaaaagaggtgaattcccttcgagtgggagacaagaaattctagcagagttggctatg 380
Query: 181 ccacaagcagggagctttgtcaatggattttgaaagggataggtgagctgggtgaattcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccacaagcagggagctttgtcaatggattttgaaagggataggtgagctgggtgaattcc 440
Query: 241 gagaggaagaggggtgattggagcaaaaaggacagggggt 280
|||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 gagaggaagaggggtggttggagcaaaaaggacagggggt 480
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space: 181841
Effective search space used: 181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
