Query= MSMg01no475_g04.b1 MSMg01no475_g04.b1 CHROMAT_FILE:
MSMg01no475_g04.b1 PHD_FILE: MSMg01no475_g04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:08 2005
(249 letters)
>mm_chr6_115881529_115882177
Length = 649
Score = 482 bits (249), Expect = e-140
Identities = 249/249 (100%)
Strand = Plus / Plus
Query: 1 gcagacaagatgagacaccctttcctttctttacctaagggcctccacccgatgtcacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcagacaagatgagacaccctttcctttctttacctaagggcctccacccgatgtcacct 260
Query: 61 tggcccctctgcaagccaattaggccccggtggcagcagtgggattagcgttagtatgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggcccctctgcaagccaattaggccccggtggcagcagtgggattagcgttagtatgat 320
Query: 121 atctcgcggatgctgaatcagcctctggcttagggagagaaggtcactttataagggtct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctcgcggatgctgaatcagcctctggcttagggagagaaggtcactttataagggtct 380
Query: 181 ggggggggtcagtgcctggagttgcgctgtgggagccgtcagtggctgagctcgccaagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggggggggtcagtgcctggagttgcgctgtgggagccgtcagtggctgagctcgccaagc 440
Query: 241 agccttggt 249
|||||||||
Sbjct: 441 agccttggt 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no475_g04.g1 MSMg01no475_g04.g1 CHROMAT_FILE:
MSMg01no475_g04.g1 PHD_FILE: MSMg01no475_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:08 2005
(409 letters)
>mm_chr6_116054670_116055478
Length = 809
Score = 770 bits (398), Expect = 0.0
Identities = 407/410 (99%), Gaps = 2/410 (0%)
Strand = Plus / Minus
Query: 1 aagggcttcctattctaggtagctagttctagaccaaacaggactacatgatgtcagaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 aagggcttcctattctaggtagctagttctagaccaaacaggactacatgatgtcagaac 550
Query: 61 aaacaagaactctttatcccgagaaagtgtgtttgctgagctccttgagcagatcccagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aaacaagaactctttatcccgagaaagtgtgtttgctgagctccttgagcagatcccagc 490
Query: 121 ttctttgctatttcagatcattttcctccttgctagtttcccccccctgtacgttactaa 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 489 ttctttgctatttcagatcattttcctccttgctagttt-ccccccctgtacgttactaa 431
Query: 181 agagaaattcactaaggaaactgttcaacatctcctagatgagccaaaatgatctagcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 agagaaattcactaaggaaactgttcaacatctcctagatgagccaaaatgatctagcac 371
Query: 241 cttccagtgtgggaatttcacttagttctcctattgattcataagttgattgatgtttca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 cttccagtgtgggaatttcacttagttctcctattgattcataagttgattgatgtttca 311
Query: 301 gtgccttttgattttacttttgagtgataactatttctcagcattgaaaaagt-aaaaaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 310 gtgccttttgattttacttttgagtgataactatttctcagcattgaaaaagtaaaaaaa 251
Query: 360 aaatataaatgacattttgcttccaaccatatctttttatggcaatcaca 409
|||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 250 aaatataaatgagattttgcttccaaccatatctttttatggcaatcaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space: 320000
Effective search space used: 320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
