Query= MSMg01no475_j16.b1 MSMg01no475_j16.b1 CHROMAT_FILE:
MSMg01no475_j16.b1 PHD_FILE: MSMg01no475_j16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:26 2005
(495 letters)
>mm_chr6_7846940_7847834
Length = 895
Score = 737 bits (381), Expect = 0.0
Identities = 384/385 (99%)
Strand = Plus / Minus
Query: 107 taaaaattgtacagtctaataaagaaagaagcctgacttaatgcatagttaagttgtaga 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 taaaaattgtacagtctaataaagaaagaagcctgacttaatgcatagttaagttgtaga 836
Query: 167 taaggaaatatggataaaggttctgtagttaaatagattaacatcatcagttagaaatat 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 taaggaaatatggataaaggttctgtagttaaatagattaacatcatcagttagaaatat 776
Query: 227 catatactaattgggacaataggaaagaggtcttaaggacaagactgcactcataaaaag 286
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 775 catatactaattgggacaataggaaagaggccttaaggacaagactgcactcataaaaag 716
Query: 287 ctctgggtcataataatgcaaactaacgtctcaaactttgatttggaaagagtgtgcttg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 ctctgggtcataataatgcaaactaacgtctcaaactttgatttggaaagagtgtgcttg 656
Query: 347 aacaaagaaaacttcaaggtatcctgcatccactaagctccgtagtaattgctttctcac 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 aacaaagaaaacttcaaggtatcctgcatccactaagctccgtagtaattgctttctcac 596
Query: 407 gtttagcctcaaaaacacatagagaacaaactagctagcaataaagtttgacatcatcca 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gtttagcctcaaaaacacatagagaacaaactagctagcaataaagtttgacatcatcca 536
Query: 467 cacggagctggttttataagcatgc 491
|||||||||||||||||||||||||
Sbjct: 535 cacggagctggttttataagcatgc 511
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no475_j16.g1 MSMg01no475_j16.g1 CHROMAT_FILE:
MSMg01no475_j16.g1 PHD_FILE: MSMg01no475_j16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:27 2005
(406 letters)
>mm_chr6_7626046_7626850
Length = 805
Score = 723 bits (374), Expect = 0.0
Identities = 398/406 (98%), Gaps = 1/406 (0%)
Strand = Plus / Plus
Query: 1 tcatatctggcggcagagacaggtaataggaagaaaaccgatgatccagaaaggggactc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatatctggcggcagagacaggtaataggaagaaaaccgatgatccagaaaggggactc 260
Query: 61 tcagttcgagacttggggaaaaaagaagacaatctgagtcagatggctggcacggcttcc 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagttcgagacttggggaaaacagaagacaatctgagtcagatggctggcacggcttcc 320
Query: 121 tgacaacctccccagactgagtcatggagaagaaagagtcacattccggcctcctaggga 180
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 321 tgacaacctccccagactgagtcatggagaagaaagagttacattccagcctcctaggga 380
Query: 181 ccacactgcatgattagccatatactaatgtttgtacttgaaataaaaccagcatctagg 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccacactgcatgattagccacatactaatgtttgtacttgaaataaaaccagcatctagg 440
Query: 241 gagggaagctttctgtcttaaagtatttctttccttctgtgcctatgaaaaaattacctg 300
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 441 gagggaagctttctgtcttaaagtatttctttccttctgcgcctatgaaaaa-ttacctg 499
Query: 301 ttgctataaaacgttaattatcatgagtgacctggtcatgagggtatatgaatattcata 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tttctataaaacgttaattatcatgagtgacctggtcatgagggtatatgaatattcata 559
Query: 361 ccatcatatgtacaaaactcccagtgacactcgtcaggacatgcag 406
||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 560 ccatcatatgtacaaaagtcccagtgacactcgtcaggacatgcag 605
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 805
Length adjustment: 9
Effective length of query: 397
Effective length of database: 796
Effective search space: 316012
Effective search space used: 316012
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
