BAC Information

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BAC

Clone NameMSMg01-475P10
Chromosome6 (Build37)
Map Location 133,424,098 - 133,424,229
singlet/doubletsinglet
Overlap genenone
Upstream genePrh1, Prp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618, 5530400C23Rik
Downstream geneEG545884, EG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063, Etv6, LOC100043660, Bcl2l14, Lrp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475P10.T7 (MSMg01no475_p10.b1)MSMg01-475P10.TJ (MSMg01no475_p10.g1)
ACCAG557667AG557668
length739810
length of high quality
(start - end)
570 (61 - 630)34 (79 - 112)
definitionCHROMAT_FILE: MSMg01no475_p10.b1 PHD_FILE: MSMg01no475_p10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:55 2005CHROMAT_FILE: MSMg01no475_p10.g1 PHD_FILE: MSMg01no475_p10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:55 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCTCAGC
ATTTTCCTCTCAATGGCATAGAAGAGATTAAAGAAATGTTCATCACCCAT
AGTCCTCAGGGAAATTCAAACCAGAATAACCCTAACATTACACTTTACAT
CAATCATAATGACTAAGATAAAAAACTCAAGTGAGGATATAGAGATTGAG
GAACACTCCTCCATTGCTCAGGGAATTGCAAATTCATACAACCACTCTAT
AAATCAATCTGGTGGTTCCTCAAAAAATTGGAAATAGTTCTACCTGGAGA
CCCAGCTAGATAACTCCTGGACATATACCCACAAGATATTCCATCATACT
ACAAGGATTCAAGCTCCACTATATTCCCAGCAGCCCTATTTGTAATAACC
AGAAGATGGAAACAGAAGGTGCAAACAGCCAAGATGTCCCTCAACCAAAC
AATGATACAGAAATTTTGGTTCATTTATACAACAAAGTTTAATTCAACTT
CTATCACCTCTCTCCATTTCCCAAGATATTTAATAGTAGTCTATTATCAA
TATCACCACTTTCATTCTAAGAAATGATTATACATTATTTTGCCCAAAGA
CACAGCCAAATTTTATCAAACCTTGATAAAGAGGTAGGGTGCATGGTCAT
TACCAAAAAAATTAGTGATAGAGTTGAATAGCTTTACTGGCAGGGATTAA
AAAAAACCATCATTAATTTTGCAGGCAACGAAAAGAATN
NTCTCTTTCTTCGATGATATGTGTAGGCTGGNGGTCGCCTTTTCCAGACT
TTAGGTGAACTATAGATTCACCCGCGGAATTCTTTGTTTAGCTCTGTTCC
CCATATTTTAATAGGGTTATTTGGTTCTCTGGAGTCTAACTTCTTGAGAT
ATATATATATATATCTATATATATATATATATATATATATATCATCATAT
ATATATATATACACATCCCTCTCTACATTTACCCACATCTCATATATACC
TATCTTTCTCCCTCCCTTTCCCACCTTTTTTTTCTCCCCCCTTTTCCCCC
CCATACTTATACCACACACATCCTTTTCTTTTCCTTCCCTTTTTATCCCT
CCCCTTTTTTTCCTCTCCCCTTTTTCCCCCACCCCCCACCCATTCTTTTT
CTTTTTTTCTCCCCCTCCTCTCTTCCATCTCTTTTTATTCCCCTCCCCAC
ACCCTCTCTTCTTTTTCCCTTCTTGCTTTCCCCCCCTCTTACTTTTTTAT
TCCCCCCTTTTTTCGTTCCCACTCCTTCTACTATCTCCTTCCCCCTTCTC
TTTTCTCTTCTTCTCCCATTCCTCCTTTTTCTCCTCTCTCCTCTCTTCCC
TTTTTTCCTTTCTCTCCCTTCTCTTCTTTTTCCTTCCCCCCCCCTCCTCC
CTTTTTTCTTTTTTTCTTCTCATTCCCTCTCTCCTTTATCCTGTCCTCTT
TTCCCCCCTTTTTACTCTCCTTTTTTCCCTCCACCCCTTCTCTTTTTTCT
CCCCCCTCCCCCCTTTTGTTTTCTCCATTTCGGCCCCCTTTTCCTCCCTT
CTTGCACTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_p10.b1 MSMg01no475_p10.b1 CHROMAT_FILE:
MSMg01no475_p10.b1 PHD_FILE: MSMg01no475_p10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:55 2005
         (570 letters)



>mm_chr6_133423456_133424425
          Length = 970

 Score =  224 bits (116), Expect = 1e-62
 Identities = 128/132 (96%)
 Strand = Plus / Minus

                                                                       
Query: 438 cttctatcacctctctccatttcccaagatatttaatagtagtctattatcaatatcacc 497
           |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 774 cttcaatcacctctctccatttcccaagatatttaatagttgtctattatcaatatcacc 715

                                                                       
Query: 498 actttcattctaagaaatgattatacattattttgcccaaagacacagccaaattttatc 557
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 714 actttcattctaagaaatgattatacattattttgctcaaagacacagccaaattttctc 655

                       
Query: 558 aaaccttgataa 569
           ||||||||||||
Sbjct: 654 aaaccttgataa 643


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)