Query= MSMg01no476_a05.b1 MSMg01no476_a05.b1 CHROMAT_FILE:
MSMg01no476_a05.b1 PHD_FILE: MSMg01no476_a05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:59 2005
(594 letters)
>mm_chr6_113052419_113053412
Length = 994
Score = 1110 bits (574), Expect = 0.0
Identities = 580/582 (99%), Gaps = 1/582 (0%)
Strand = Plus / Plus
Query: 5 gaattcttgtttagctacttgaggggggatggatatttatttgcaagttggtacaaagac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgtttagctacttgaggggggatggatatttatttgcaagttggtacaaagac 264
Query: 65 agcaagtggagcagtcacactgatcatgaattgtgtcaagtcgataggaaagttcacttc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcaagtggagcagtcacactgatcatgaattgtgtcaagtcgataggaaagttcacttc 324
Query: 125 atttgcattttagttttagttttaacagtgtcaccctgagttggatgagaacaggtattt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atttgcattttagttttagttttaacagtgtcaccctgagttggatgagaacaggtattt 384
Query: 185 tgccacaccccatttcaagaggcccaggtactacagaaagctgctttagtttatcgcatc 244
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgccacaccccgtttcaagaggcccaggtactacagaaagctgctttagtttatcgcatc 444
Query: 245 ggtagctttctcaagtaatggtgcaaaagtaatacctttatatggtcttaattttggact 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggtagctttctcaagtaatggtgcaaaagtaatacctttatatggtcttaattttggact 504
Query: 305 aattgaccattcagaattagttttcttttgccacattaatgtctcatttatcaaaatgaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aattgaccattcagaattagttttcttttgccacattaatgtctcatttatcaaaatgaa 564
Query: 365 atccacatgactcaaatcagtaactatttaaaatcttcgttaattgattttagttggtat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atccacatgactcaaatcagtaactatttaaaatcttcgttaattgattttagttggtat 624
Query: 425 catatactttttgttttatttagctattttttaatagtattgataattttacttctttct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 catatactttttgttttatttagctattttttaatagtattgataattttacttctttct 684
Query: 485 ttttcagattttagaggcagggtttctctgggtaggtctggctgtcctgggaatcactat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttttcagattttagaggcagggtttctctgggtaggtctggctgtcctgggaatcactat 744
Query: 545 atacactggactggccttgaacttaaggat-ccccccccccc 585
|||||||||||||||||||||||||||||| |||||||||||
Sbjct: 745 atacactggactggccttgaacttaaggattccccccccccc 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no476_a05.g1 MSMg01no476_a05.g1 CHROMAT_FILE:
MSMg01no476_a05.g1 PHD_FILE: MSMg01no476_a05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:59 2005
(607 letters)
>mm_chr6_113077088_113078096
Length = 1009
Score = 1145 bits (592), Expect = 0.0
Identities = 604/609 (99%), Gaps = 2/609 (0%)
Strand = Plus / Minus
Query: 1 tctccacttactttttttagttgctaatatgtaatctagatggatgagaaataagaatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tctccacttactttttttagttgctaatatgtaatctagatggatgagaaataagaatgc 572
Query: 61 ttacaaaaattacaaggtaggattctgtggaaaagaaattattatctgtgattttttttt 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 571 ttacaaaaattacaaggtaggattctgtggaaaagaaattattatatgtgattttttttt 512
Query: 121 --aaagacacagttttaagttgttcaccattctgtagctctcctatcctaacataagaca 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 taaaagacacagttttaagttgttcaccattctgtagctctcctatcctaacataagaca 452
Query: 179 cttccaattttgataaacattaatttcagacagactgtctccaaataggaaaaggtaaat 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cttccaattttgataaacattaatttcagacagactgtctccaaataggaaaaggtaaat 392
Query: 239 tagtataattttatacctttagagaacataggtcagtaaatattctcaacagagtagtta 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tagtataattttatacctttagagaacataggtcagtaaatattctcaacagagtagtta 332
Query: 299 tagaagattagtagccagtggttaattagaacctgggaagccttcaaggaaattttatta 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tagaagattagtagccagtggttaattagaacctgggaagccttcaaggaaattttatta 272
Query: 359 tgaaaaattctctattacataagtatccgtggtttactaagttgaaggagaacgtaaaca 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tgaaaaattctctattacataagtatccgtggtttactaagttgaaggagaacgtaaaca 212
Query: 419 gaggtaaatgaatatgtctatgtgtatatatacatttgtatatataaatataaataaaat 478
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 211 gaggtaaatgaatatgtctatgtgtatatatacatctgtatatataaatataaataaaat 152
Query: 479 taagaatcatttgaatcacatcaatgttctaggacatgacaagatgtctaanaagccaag 538
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 151 taagaatcatttgaatcacatcaatgttctaggacatgacaagatgtctaaaaagccaag 92
Query: 539 accaagagtgatatgctctcttacacagtcttagcacacaggtcatcaaaagcacagacc 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 accaagagtgatatgctctcttacacagtcttagcacacaggtcatcaaaagcacagacc 32
Query: 599 ctctgaggt 607
|||||||||
Sbjct: 31 ctctgaggt 23
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1009
Length adjustment: 10
Effective length of query: 597
Effective length of database: 999
Effective search space: 596403
Effective search space used: 596403
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
