BAC Information

Click to search

BAC

Clone NameMSMg01-476L20
Chromosome6 (Build37)
Map Location 39,886,851 - 39,887,188
singlet/doubletsinglet
Overlap genenone
Upstream geneTbxas1, 1700025N23Rik, Parp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19, Mkrn1, ENSMUSG00000068601, Dennd2a, Adck2, Ndufb2, Braf, Fth-ps2, Mrps33, LOC665247, LOC665254
Downstream geneEG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam, EG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476L20.T7 (MSMg01no476_l20.b1)MSMg01-476L20.TJ (MSMg01no476_l20.g1)
ACCAG558259AG558260
length764773
length of high quality
(start - end)
417 (41 - 457)221 (324 - 544)
definitionCHROMAT_FILE: MSMg01no476_l20.b1 PHD_FILE: MSMg01no476_l20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:56 2005CHROMAT_FILE: MSMg01no476_l20.g1 PHD_FILE: MSMg01no476_l20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGCATCCGCGGAATTC
TCTAGCATTTCCCTTCTGGCTTTTACAACAACTTGTAGGTCTATAATCTT
TTAGCTAATAGTTCTAAGGTGACTAACACTGATTAACAGTATCTACAATC
ACTTGGGAGACAAAACTCGAGACATATGGAGAAATCCACCCGAACTGTAG
GTCATGTCATGCCATCCCGAGGGCTGAGCTCCTAGTGTAAGGAAGCAGGA
GAAAGCCAGTGGCAGGCTTCATCTGTCTGTTTGCTAAGCGCAGCTGCAAC
ACATCCAGCTGCCTCTTGTTCTCACCTCTCAGGCTTCTCCATCATGGCCG
ACTTTACCCTCTTAGCCATTTGGTAAGGTGTTTATTACAGCAACAAGAGT
AATAATGAGGATGAGTATTTATTGGGGGCATCACAGGGACAGGCTTGTCA
CTGAGTGCTGAGACTGAGCCCCGATACTATCAAGTTCCTATTCTATAAGA
AATGGGATGGCTCCAGTGGAAGAGGGTCAATAACCAAAAAGTTTACATCA
GATGATGTATAATGAGAACATCACAGGGCCTACAATCTATAGGTAAAATT
AGACCATGATTACGCACTCTGCTTGCACTTACAGGTCATTGTGCGCTTAA
GTTTCTCTTAATCCCGGTTCAATTTGCGACGCAAAGCGACCGTTCTTTTC
CACCTATTGATGTTCCCGCTACGCCTATATAGCTATCCATTTATACCTAC
TAACAGTCTCTGAA
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGGCCTCGAACTCAAA
AATCCACCTGCCTCTGCCTCCCAAGGGCTGGGATTAAAGTCGTGCGCCAA
GAAGTGCTTGCTGACAGGAGCCTGATATAGCTGTCTCCTGAGAGATTATG
CCAGAGCCTGACCAATACAGACACAGATGCTCGCAGTCATCCATTGGACT
GAGCATGGGGACCATAATGGAGGAGTTAGGGCAAGGACTGGAGGAGCTGA
AGGGGTTTGCAACTTTTTATTAAGAACAACAATATCAACCAACCAGACAC
CCTCTCCCAGAGCTCCCAGGGACTAAACCACCAACCAAAGAGTACACATG
GAGGGACCCATGGCTCCAGCTGCACAAGTAGCAGAGGATGTTCCTTATCT
GGCATCAGTGGGAGAGGAGGCCCTTGGTCCTATGAAGGCTTGATGCCCCA
GTGTAGGGGAATGCTAGGGCAGTGAGGTGGGAATGGGTGTGTGCGTCTTC
TCCTTTCCCTTTTCTTCTTCCTCCTTCCTCCTTTTCTTTCTCCTCCCCTC
TTCCCCCCTATCTTCCTTTTTTTTTTCCTTTCTCCCTTTTTCTCCCCTTA
TTTTTTTTTTTTTCTTCCTCTCTCTTTTTTTTCTCCTTTTTTTTCCTCTT
CCCTTTCTCCTTCTTTCCTCCCCTTTTTCCCCTTTTTCTTCTCTTCTCCC
CCCCCTTTTTTCTCTCCTCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_l20.b1 MSMg01no476_l20.b1 CHROMAT_FILE:
MSMg01no476_l20.b1 PHD_FILE: MSMg01no476_l20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:56 2005
         (417 letters)



>mm_chr6_39886851_39887668
          Length = 818

 Score =  561 bits (290), Expect = e-164
 Identities = 326/338 (96%), Gaps = 1/338 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctagcatttcccttctggcttttac-aacaacttgtaggtctataatctttta 63
           |||||||||||||  | ||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 338 gaattctctagcagatgccttctggcttttacaaacaacttgttggtctataatctttta 279

                                                                       
Query: 64  gctaatagttctaaggtgactaacactgattaacagtatctacaatcacttgggagacaa 123
           |||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 278 gctaatagttcttatgtgactaacattgattaacagtatctacaatcacttgggagacaa 219

                                                                       
Query: 124 aactcgagacatatggagaaatccacccgaactgtaggtcatgtcatgccatcccgaggg 183
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 218 aactcgagacatatggagaaatccacccgaactgcaggtcatgtcatgccatcccgcggg 159

                                                                       
Query: 184 ctgagctcctagtgtaaggaagcaggagaaagccagtggcaggcttcatctgtctgtttg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 ctgagctcctagtgtaaggaagcaggagaaagccagtggcaggcttcatctgtctgtttg 99

                                                                       
Query: 244 ctaagcgcagctgcaacacatccagctgcctcttgttctcacctctcaggcttctccatc 303
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 98  ctaagcgcagctgcaacacatccagctgcctcaagttctcacctctcaggcttctccatc 39

                                                 
Query: 304 atggccgactttaccctcttagccatttggtaaggtgt 341
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 38  atggccgactttaccctcttagccatttggtaaggtgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 818
Length adjustment: 9
Effective length of query: 408
Effective length of database: 809
Effective search space:   330072
Effective search space used:   330072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)