BAC Information

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BAC

Clone NameMSMg01-476M04
Chromosome6 (Build37)
Map Location 31,603,616 - 31,603,827
singlet/doubletsinglet
Overlap genenone
Upstream geneTsga14, Mest, Copg2, Copg2, Tsga13, Klf14, LOC100038973, AB041803, Mkln1, Podxl, EG619959
Downstream geneLOC620104, 1700012A03Rik, Plxna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476M04.T7 (MSMg01no476_m04.b1)MSMg01-476M04.TJ (MSMg01no476_m04.g1)
ACCAG558275AG558276
length751752
length of high quality
(start - end)
244 (79 - 322)224 (79 - 302)
definitionCHROMAT_FILE: MSMg01no476_m04.b1 PHD_FILE: MSMg01no476_m04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:58 2005CHROMAT_FILE: MSMg01no476_m04.g1 PHD_FILE: MSMg01no476_m04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATCAGAAGGTGGGGGCGGGAGGGCGAGTCGCGATTTCAAAAGGAGCCGC
GGAATTCAAGGCCCTCACCTAAACATAACAAAAGTAATATACAGCAAACC
GGTAGCCAACATTAGACTAAATGGAGAGTAATTTGAAGCCATCCTACTAA
AACCAGGGACTAGACAAGGCTGTCCACTCTCTCCCTACATGTTCAATATA
GTACTCGAAGTCCTAGCCAGAGCAATTAGACAACAAAAGGAGATCAAGGG
GATAAAAATTGGAAAGGAAGAAGTCAAAATATCACTATTTGCAGATGATA
TGATAGTATATTTAAGCTACCCTTTTTTTTCCACCAGAGAACTACTAAAC
CTGATAAACAATTTCAGCAAAGAGTCTGGATATAAAATTAACTTAAACAA
ATCAGTGACCTTCCTCTACTCAAAGGATCAACAGGCTGAGAAAGAAAGTA
GGGAAACAACATCTTTCACAATAGTCACAAATAATATAAAATATCGTGGT
ATGACTCTAACCAAGCAAATGACAGATATGTATGACAAGAACTTCAAGTC
TCTGAAGAAAGAAATCAAAGATCTTATAAGGTGGAAAGATCTCCCATGCT
CATGGAGTGGTAGGGCTAATATAGTAAAAATGGCCATCTTGCCTAAAGTA
ATCTACAGATTTAATGCCATTCCCTTCTAAATTCCTACTCAATTCTCCAT
AGAGCTACAAAGATGAATTTCAAAATTCACCTGGTATTAACCAACAACCC
G
NTGGCCGATGATATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTCTGAGAACAATCTGCCGTGATGTCTGCAGCCC
ACGTTCTGGCCTGATAAAGGGATTTGAACTCTGACTCTCCTCCTTTGGCA
GGACAAAGCTAATGATGGGCAAAGGGTGGCACAGGGAAGAGTGGGGATAG
TGTTGTGAACTTACCCCAGCCGCCAGGCCTCTAACTCTTTAAGGGTTCTC
TTGCCTAACAGTGATCACATGCATTATTTAGGGATAGGTGGGGGGGGGNG
NNNNNNNNNNNGNNNNNNNNTTTTTTTTTTTTGNGGGGGNGGNGNGGGNG
GNNGCGTTGCGTTTTTTTTCTCCCTTCCTTTTCGGTTGGGTCTCCCCGCC
TTCTCCCTTTCCCCTTCCTCTCCCCTGTCCTCTCCGCCCCCGCTCCCTCC
GTTCCTCTGTTTTTCTTCTTTCCCCTCTCTTTTCCCCCCTTTTCCTTCTC
CCTTCGTTCGCCTTTTCGTTCCCCCTTCGCCTTCCCCCTTTCCCTGTTTT
TGCCCCCTTTTTCTCCTTTTTCCCCCTTTTTTTCTCCCCCGTTTTTCCGT
TCCTTTTCCTTCCCTTCTTTCCCTTTTCCCCCCCCCCCTCTTTCTTTTCC
CCCTTTTCCCCCGCCTTCTTCTTCCTTTGTTTTTTTTCCTGTCCCTTCTT
GTCCCCCCCCCCTCCTCTTTTTTTCCCCCGCCCCCTTTTCCCCCTCCCAC
CN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_m04.g1 MSMg01no476_m04.g1 CHROMAT_FILE:
MSMg01no476_m04.g1 PHD_FILE: MSMg01no476_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:58 2005
         (224 letters)



>mm_chr6_31603416_31604039
          Length = 624

 Score =  410 bits (212), Expect = e-119
 Identities = 212/212 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgccgtgatgtctgcagcccacgttctggcctgataaagggatttgaactctgactct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgccgtgatgtctgcagcccacgttctggcctgataaagggatttgaactctgactct 260

                                                                       
Query: 61  cctcctttggcaggacaaagctaatgatgggcaaagggtggcacagggaagagtggggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctcctttggcaggacaaagctaatgatgggcaaagggtggcacagggaagagtggggat 320

                                                                       
Query: 121 agtgttgtgaacttaccccagccgccaggcctctaactctttaagggttctcttgcctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgttgtgaacttaccccagccgccaggcctctaactctttaagggttctcttgcctaa 380

                                           
Query: 181 cagtgatcacatgcattatttagggataggtg 212
           ||||||||||||||||||||||||||||||||
Sbjct: 381 cagtgatcacatgcattatttagggataggtg 412


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space:   132225
Effective search space used:   132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)