NTGCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTCGAAATCTCCATAAATCTCTATTTTAAAATACACTTAAAGC
TTCAGTAGAGTACTTATAACTGCTTTTTATAATAGATATATAAGTATGCA
CATGGATATGAAAAATACAAACACGTATTTACAAGATATATATGTACTTG
TTTGTATTGAAGTTTAGAAAAAGTCCACTAAAATGTAGCAAATGAAGGCC
TTGTACATAATAATTTCATCTAAAGTTAATTATGTTTATAAACTAGAAGC
TATTTTTTGAGCTGTTCTCACAAAAATTGTCAAGGATATAAAGCTTTGTG
TAGAGCTAATGCAAGTATTCATTGTAACTAACAGAATTGGGGCTCTTTCA
GGGAAGAAGTGAAAATTTCAAAGGACTTTATATACAACCAAATCCTGAAA
TAAATGGAGAATGACTTCTGTTCCTATGAATACAGAGCCTGACACTTTGA
CAAAACCTTCTTTTAGAATAATAAAGTCTCCATAGTGTACGATTAAAAAA
AAAAAAAGAATCATTGCATTGCTATTTCTTCTGGCAGTAGGAAAGTGGAG
AGGAATTGAGAGAGTTAATGGAAAATTAATAATAAAAAAGAAAGGGCAAA
AGTGATGTCAATAATGTGCTGGATGAGCTATCGGGTCATAGACATTTATA
TAGTCAAGAGAGTAGAAGATGGACGGAGGGCTGATCACAGTCTATAAATA
C

NNNNNCCAATTAAATGNNTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTGATCTTTCCGAACTTTTATCA
TGAATGGTGTTGGATCTTGTCAATGCTTTTTCTGNCATTCCCCAACGAAA
NAATGAAATNCATTGGNTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTTTTTTTGTCCTTTGAAGTTGTAANAATAANNAGCGAGCA
ATAGGGTGGGGGGGGGGGGGGGGGGGGTGGTGGGGGAGGGGAGAAAAAAN
TTTTTAAAAAAAAATCCCCTTTCGGGCGCCTCTNNNNNCTCTTTTTGGNT
CCCNAAATTTTTTCCCCCCCCCCCATGGGGGGTCTNNNNNNNAATATTTT
TTAAAAAAAAAAAAAAACCCCCCCAAAAACCTCTTTTTTGGCGCCTTTTC
CCCCCCCTACCCTNCCCCAAAACNNNNNNAAAAAAAAAAAAAAAGGGGTT
TAAAAAGGGGAAACTCTTGGAAATCCCCCTTTAAACCCCAAAAATTTTTT
TTTTTTTGAAAAAATATTTTTTTTTTTTTCTAAAAAACCCCCCCAAAAAA
AAAAAAAATTTTTCTCCACAAAAAAAACCCCCCCCCCCACTTTTTTTNTT
TTGGAAAAACACCCTTTTTCCGGGGGAAGAAG

Query= MSMg01no476_o02.b1 MSMg01no476_o02.b1 CHROMAT_FILE:
MSMg01no476_o02.b1 PHD_FILE: MSMg01no476_o02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:08 2005
         (612 letters)



>mm_chr6_16527003_16528011
          Length = 1009

 Score = 1133 bits (586), Expect = 0.0
 Identities = 602/608 (99%), Gaps = 3/608 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcgaaatctccataaatctctattttaaaatacacttaaagcttcagtagagt 64
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgaaatctccataaatctctattttaaaatacacttaaagcttcagtagagt 264

                                                                       
Query: 65  acttataactgctttttataatagatatataagtatgcacatggatatgaaaaatacaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acttataactgctttttataatagatatataagtatgcacatggatatgaaaaatacaaa 324

                                                                       
Query: 125 cacgtatttacaagatatatatgtacttgtttgtattgaagtttagaaaaagtccactaa 184
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cacgtatttacaaaatatatatgtacttgtttgtattgaagtttagaaaaagtccactaa 384

                                                                       
Query: 185 aatgtagcaaatgaaggccttgtacataataatttcatctaaagttaattatgtttataa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatgtagcaaatgaaggccttgtacataataatttcatctaaagttaattatgtttataa 444

                                                                       
Query: 245 actagaagctattttttgagctgttctcacaaaaattgtcaaggatataaagctttgtgt 304
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 445 actagaagctattttttgagctgttctcacaaaa-ttgtcaaggatataaagctttgtgt 503

                                                                       
Query: 305 agagctaatgcaagtattcattgtaactaacagaattggggctctttcagggaagaagtg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agagctaatgcaagtattcattgtaactaacagaattggggctctttcagggaagaagtg 563

                                                                       
Query: 365 aaaatttcaaaggactttatatacaaccaaatcctgaaataaatggagaatgacttctgt 424
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 564 aaaatttcaaaggactttatatacaaccaaatcctgaaataactggagaatgacttctgt 623

                                                                       
Query: 425 tcctatgaatacagagcctgacactttgacaaaaccttcttttagaataataaagtctcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcctatgaatacagagcctgacactttgacaaaaccttcttttagaataataaagtctcc 683

                                                                       
Query: 485 atagtgtacgattaaaaaaaaaaaaagaatcattgcattgctatttcttctggcagtagg 544
           ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 684 atagtgtacgattaaaaaaaaaaa--gaatcattgcattgctatttcttctggcagtagg 741

                                                                       
Query: 545 aaagtggagaggaattgagagagttaatggaaaattaataataaaaaagaaagggcaaaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 aaagtggagaggaattgagagagttaatggaaaattaataataaaaaagaaagggcaaaa 801

                   
Query: 605 gtgatgtc 612
           ||||||||
Sbjct: 802 gtgatgtc 809


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1009
Length adjustment: 10
Effective length of query: 602
Effective length of database: 999
Effective search space:   601398
Effective search space used:   601398
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)