BAC Information

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BAC

Clone NameMSMg01-477G20
Chromosome6 (Build37)
Map Location 100,956,361 - 100,956,471
singlet/doubletsinglet
Overlap genenone
Upstream geneRybp, Shq1, LOC625221, BC049816, Ppp4r2
Downstream geneEG545870, LOC100043321, Pdzrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477G20.T7 (MSMg01no477_g20.b1)MSMg01-477G20.TJ (MSMg01no477_g20.g1)
ACCAG558781AG558782
length821754
length of high quality
(start - end)
113 (73 - 185)616 (81 - 696)
definitionCHROMAT_FILE: MSMg01no477_g20.b1 PHD_FILE: MSMg01no477_g20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:52 2005CHROMAT_FILE: MSMg01no477_g20.g1 PHD_FILE: MSMg01no477_g20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCCGATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTACCAGATCCGCGG
AATTCTCCTGCATTGCCTTTGTCATTGGGGTCTACTCAGGTATGTGGGTT
CTACCACATCTGTAAAGCTCACGGGTCAGCTAGTCACAACAAAATGGTGG
TATGCTCAAGTCTGCCCTGCGCTGCTGGCAGCCGACAGGAGCTAGCATTT
AGGGTGGGGCTTTTCTCACATCCCATCCGACTTTAACTTTTGCTGCTGNN
NAAACCCTTCTAAATTCCAACNCCTTGTGNCCTAAAGGGTTGGCCCAAAC
CCTTTTATTGTGTGGCNNTTCGAAAATTTTAAAACTTTTAACACAATTTT
CCCCATTATGGGNTTATTACTCTNNAAAAAAACGGTGGGGATGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGTGGGGGGGAGGGGGGGGGGGGGGTGGCT
GGGGGNCTNNCCNNNCCCCAAAAACACCCCCCCTTNNGGGGGGNAGAAAA
AAAAAAAAAAAAACACACCCCGGGGGGGGGGGTTTTTTTTTTTTTCCCCC
CCTTTTTTAAAAAAAAAAAAAAAAAAAAAAATATTTTTTTTTTTTTCCCC
CCCCCCCCCCCCCCAACATNANTTTTTTTTTTCTCGGGGTTTCCTACAAA
AAAAAATTTTTTTTTTTATTTAAAAAACACCCCCCCCAAAAAAAAAAAAA
ATATTTTTTTTCCCCCCCCCCTTTTTTTTAACCCCCCCCCCCCCCCCCCC
CACACACGAGGGAAATCTTTTCTTCCCCTTCCCCCCCNGTTGGTTTGTTT
TTATTTACCACACAACCAAGG
NNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGTGTCAACCAGGTTGGC
CTTGAACTCACAGAAATCCATTGCCTCTGCCTCCCAAGTGCTGGGATTAA
AGGTGTGCACCACCACTGCCCAGCAAGATTTGGATCCTTTTTGAAATATT
CATTCTTATCTGTGTGTAACACACGTGTGCACACGCGCGCGCACACACAC
ACACACACACACACACACACACACACACATGTAATTTTTACTCTCCTGCT
CCGCTTGTTCTCTTGGACGCTTATTGTCTCTATCTGCCAGCCTAGGCCTA
ACTTCTGGCCGCCTCCGTACAGTCTTATCTAGACCTAGAATGTTTTAGCC
TCTGATACTTACTGCTGAATAAGCTCACCCTTTCTTGTTCTTTTGCATCT
CCAACTGGCTGGTCAACTCAGCTGTTTTGGCTCAAACTTCTCTCCAAACT
GACTGATTCAATCTGGCTTTTCTCTCCTGGCCTCTCCTGCAATGGAGTCA
TACTGAAGTGCCAGAAAAGGGCTAGTGATTCTTCCCCCCCCCCAAAAAAA
AAAACCCAGACAGAAGCTGATCCAATGCAACTCACAGCAGGGTCTTTATT
CTATTCAAGCTAGCTTGGGGGGTGGGGGAGCCCTATCATGCCTTCCCCAG
GATGGTTTTGGTGATGGGGAGCCGCAAATATACATCAGGGCAAGGCTTTT
TAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_g20.b1 MSMg01no477_g20.b1 CHROMAT_FILE:
MSMg01no477_g20.b1 PHD_FILE: MSMg01no477_g20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:52 2005
         (113 letters)



>mm_chr6_100956161_100956673
          Length = 513

 Score =  207 bits (107), Expect = 2e-58
 Identities = 110/111 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattggggtctactcaggtatgtgggttctaccacatctgtaaagctcacgggtcagcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 311 cattggggtctactcaggtatgtgggttctaccacatctgtaaagctcaggggtcagcta 252

                                                              
Query: 61  gtcacaacaaaatggtggtatgctcaagtctgccctgcgctgctggcagcc 111
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gtcacaacaaaatggtggtatgctcaagtctgccctgcgctgctggcagcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 113
Length of database: 513
Length adjustment: 8
Effective length of query: 105
Effective length of database: 505
Effective search space:    53025
Effective search space used:    53025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)