BAC Information

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BAC

Clone NameMSMg01-477K12
Chromosome6 (Build37)
Map Location 72,825,149 - 72,960,060
singlet/doubletdoublet
Overlap geneKcmf1, Tmsb10
Upstream geneImmt, Ptcd3, Rpo1-4, LOC668057, St3gal5, Atoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3
Downstream geneDnahc6, Suclg1, Olfr210-ps1, 4931417E11Rik, LOC100043338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477K12.T7 (MSMg01no477_k12.b1)MSMg01-477K12.TJ (MSMg01no477_k12.g1)
ACCAG558956AG558957
length722747
length of high quality
(start - end)		634 (49 - 682)202 (326 - 527)
definitionCHROMAT_FILE: MSMg01no477_k12.b1 PHD_FILE: MSMg01no477_k12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:09 2005CHROMAT_FILE: MSMg01no477_k12.g1 PHD_FILE: MSMg01no477_k12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,825,149 - 72,825,778)(72,959,912 - 72,960,060)
sequence
CGAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGGATCCG
CGGAATTCTTCATTTTTCTCTTGCTACATTTTGTCATTAGTTATTTGGTC
TATTCCACTTCTGTTTTTAAGAAACAAGGTTCCAGTTAGGGAGAGGCCTG
TGATTGCCATCTGAGAGGCAGCACAGGCAGGTGGGTCTCTGTGAGTTCCA
GGCCAACTTAGGCTTCACAGGGAGACCTATACAGCCCTGCCTCCAAAATC
GATGGATGGGTAGGGAGCCTCCACATGTATGTATAGGCCAGCACACTCAC
ACATGGATGATATAGAGAGACTTAATTGTCACATGAAAAATGTTTCCTGA
GTGTATCCTAATCCATTCAAGTTGATACCTGAAGTTAGGCATCACAGTGG
AACTAAAAAACAAATGCTCACCAAAACTAGAAATAATGTTTTATGTTTAC
ATAAAAAAATAGAAGTAGGCATAATGTACACAAGCTGGGTACTGATGCCC
AAGGATGCCAGAGGGTATTAGCTCCCTCCCCACAATCAAACTGGTGTTCT
GGGCGGCTCCAAGCCTGGCTGTGAGCACTGGGAACTGAAGTCGGCCTCTG
CAAGAGCAGTAAGCACTCTCAACCACAGCCATCTCCCCAGCCCCTTAGGC
TTAAATACTTTTAAAGTTAGAGTTTTATTTCTANTTTTAGTGACCCTTTT
CCTCTTCCAGATTTGTTTTATT

NCCGATGCAGTGGGAGGCCTGGNGGCCGCCTGGTCAACACATGGAGGTGA
ACTATAGAAGTACAAAAAAAAGCCAGGCCGCTAGGAGGATTCCAACCACT
AGGGGGCAGTCTCCTAGACCAGCTGTGGAGCCCATCCGCCTCAAGTTGGG
CTCTCCTTCCCAAACCAGCACCAGTCAGGGCTGACCTCAGCTTTGAGCTA
CAGGGTTGCAGAACCTGGCAGGACAGTTACTAACGGCTCTGTGGAATAAA
TTGGGGAAAGCAGATGAAAGAAAAGCCAAGAAGGAAAAAAAAAAAAAACC
TCAACCAGGCAAAAAATAAATTATGAAGTTCCTCACATGGCAAATAAAGA
GAAATGGCCACTTTCTGAATCTGAGACACGCACACATGAATATGCACATT
TAAAAAAAAATTCAGCCAAAAGAACTTAGAATTTATTTTTTATTCGTGTG
CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGGAGTTGCCCGTGGAGACTTCNGAAGAAGGTGTTGGA
ACCCTGGAGCTAGACTCACAGGCTGTTATGAATCACCCAATGTGGGTGCT
GGGAACCAAACTAGAACCCTCTGACAGAGCAGCAAATCTCTNAACTTCGG
ATTTTTCTTTTTTGTCATGAAAGAATCAGTCCCGAATAAATTTCTTTGTG
ACTTACTGCCATGGAATGGCTCACCCGCAAACCCTGAGCAAAAGAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_k12.b1 MSMg01no477_k12.b1 CHROMAT_FILE:
MSMg01no477_k12.b1 PHD_FILE: MSMg01no477_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:09 2005
         (634 letters)



>mm_chr6_72824945_72825978
          Length = 1034

 Score = 1210 bits (626), Expect = 0.0
 Identities = 629/630 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcatttttctcttgctacattttgtcattagttatttggtctattccacttct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcatttttctcttgctacattttgtcattagttatttggtctattccacttct 264

                                                                       
Query: 65  gtttttaagaaacaaggttccagttagggagaggcctgtgattgccatctgagaggcagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtttttaagaaacaaggttccagttagggagaggcctgtgattgccatctgagaggcagc 324

                                                                       
Query: 125 acaggcaggtgggtctctgtgagttccaggccaacttaggcttcacagggagacctatac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acaggcaggtgggtctctgtgagttccaggccaacttaggcttcacagggagacctatac 384

                                                                       
Query: 185 agccctgcctccaaaatcgatggatgggtagggagcctccacatgtatgtataggccagc 244
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 385 agccctgcctccaaaatcgatggatgggtggggagcctccacatgtatgtataggccagc 444

                                                                       
Query: 245 acactcacacatggatgatatagagagacttaattgtcacatgaaaaatgtttcctgagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acactcacacatggatgatatagagagacttaattgtcacatgaaaaatgtttcctgagt 504

                                                                       
Query: 305 gtatcctaatccattcaagttgatacctgaagttaggcatcacagtggaactaaaaaaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtatcctaatccattcaagttgatacctgaagttaggcatcacagtggaactaaaaaaca 564

                                                                       
Query: 365 aatgctcaccaaaactagaaataatgttttatgtttacataaaaaaatagaagtaggcat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatgctcaccaaaactagaaataatgttttatgtttacataaaaaaatagaagtaggcat 624

                                                                       
Query: 425 aatgtacacaagctgggtactgatgcccaaggatgccagagggtattagctccctcccca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aatgtacacaagctgggtactgatgcccaaggatgccagagggtattagctccctcccca 684

                                                                       
Query: 485 caatcaaactggtgttctgggcggctccaagcctggctgtgagcactgggaactgaagtc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 caatcaaactggtgttctgggcggctccaagcctggctgtgagcactgggaactgaagtc 744

                                                                       
Query: 545 ggcctctgcaagagcagtaagcactctcaaccacagccatctccccagccccttaggctt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ggcctctgcaagagcagtaagcactctcaaccacagccatctccccagccccttaggctt 804

                                         
Query: 605 aaatacttttaaagttagagttttatttct 634
           ||||||||||||||||||||||||||||||
Sbjct: 805 aaatacttttaaagttagagttttatttct 834


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no477_k12.g1 MSMg01no477_k12.g1 CHROMAT_FILE:
MSMg01no477_k12.g1 PHD_FILE: MSMg01no477_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:09 2005
         (202 letters)



>mm_chr6_72959741_72960342
          Length = 602

 Score =  288 bits (149), Expect = 1e-82
 Identities = 149/149 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagttcctcacatggcaaataaagagaaatggccactttctgaatctgagacacgcacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aagttcctcacatggcaaataaagagaaatggccactttctgaatctgagacacgcacac 261

                                                                       
Query: 61  atgaatatgcacatttaaaaaaaaattcagccaaaagaacttagaatttattttttattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atgaatatgcacatttaaaaaaaaattcagccaaaagaacttagaatttattttttattc 201

                                        
Query: 121 gtgtgcgtgtgtgtgtgtgtgtgtgtgtg 149
           |||||||||||||||||||||||||||||
Sbjct: 200 gtgtgcgtgtgtgtgtgtgtgtgtgtgtg 172


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 602
Length adjustment: 8
Effective length of query: 194
Effective length of database: 594
Effective search space:   115236
Effective search space used:   115236
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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