XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TCATGCTATTCCCCCTCCCATTTCCCTCTGAGAGGGTGCTCCCCCACCTC
ACCCATACACATCTCCGTTCCCTGGGGCATCAAGTCTCTACAGGTTTAGG
CACATCCTCTCCCGCTGAGGCTAGTCAAGCTATTCCTCTGCTACAATCCA
TGTATGCTCATAGTTGGTAGCTTAATTTCTGGGAGCTCCCAGGGGTCCGG
TTTAGTTGATGCTGTTGGTCTTCTAATGTGGTTGCCATCCCTTTCAGCTC
CTTCACTTCTTCCCCTAACTCTTCCATAAATGCTCCTGACCTCAGTCCAA
TGATCAGCTAGCTGTCAGTATCTGCATCTGTCTCAGTCAGCTGCTAATAG
AGACAGCAATGCTAGGCAACAAACTCTGACACAAATACTGATGCTATGTT
GTGCTTGTAGACAGGAGCCATGAAATAATTTTTAAACAAACCATTTCAAA
TTGTATCTAGTTTCCAAGAGTATGAAGTAGTAAAATTAGAGCAGACATGG
CTTCAAAGGAACTCTATAAGCACAGGAGCACTAAGCAATAGCAGCAGCAG
CAACAGCAGCAGCAGCAGCAGCAGCAGCATCACTCTTTCAGAACTAGATT
GTTCAGAGCACCATCTCTTATTCTGAAAGCCATAGCAGGCCTGAGCTAAT
CTGTTTAAAAAGGATACTC

NNNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTTAGAAAATTTCCCC
ATGTGCCAAGGGGAAATTCAAGGATCTTTTTCACTTTCTCTCCTATTAGA
TTCAGTGTATCTGGTTTTATGTTTTTATGTTGAGGTCCTTGATCCACTTG
GATTTGAGCTTTGTACAAGGTGACAAATATGGATCTATTTTCATTTTCCT
ACATAATAACAGCTGGTTTGACCAGCACCATTTATTGAAGATGCTTTCTT
TTCTTCCATTGTGTATTTTTGTCATCTTTGTCAACAACCAAGTGTCTGTA
AGTTTGTGTTTTATTTCTGGGTCTTCAATTCTATTCCATTGTTCTATGTG
TTTGTCTTTGTACCAAATACCATGTAGTTTTTAATCACTATCGCTTAGTG
ATTAAAAAGCTTGAGGTCAGGGATGGTGATTCCCCCAGCTCTTCTTTTAT
TGTTCAGAACTGTTTTTATTAATCTGGGTAAGCTTTTCCAGATGAATTTG
AGAATTGCTCTTTCCATGTCTTTGAAGAATCATGTTGGGATTTTGATGGG
GATTGCATTGAATCTATGGATTGCCTTTGGTAAGATGGCCATTTTTACTA
TATTAATTCTGCCAATTCATGAGCATGGGAGATCTCTCCATTTTCTGAGA
TCTTCCTTGATTTCTTTCTTAGAGACTTGACATTATTGT

Query= MSMg01no477_n04.b1 MSMg01no477_n04.b1 CHROMAT_FILE:
MSMg01no477_n04.b1 PHD_FILE: MSMg01no477_n04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:22 2005
         (670 letters)



>mm_chr6_21151326_21152395
          Length = 1070

 Score = 1040 bits (538), Expect = 0.0
 Identities = 554/562 (98%), Gaps = 6/562 (1%)
 Strand = Plus / Minus

                                                                        
Query: 115  atcctctcccgctgaggctagtcaagctattcctctgctacaatccatgtatgctcatag 174
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1070 atcctctcccgctgaggctagtcaagctattcctctgctacaatccatgtatgctcatag 1011

                                                                        
Query: 175  ttggtagcttaatttctgggagctcccaggggtccggtttagttgatgctgttggtcttc 234
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 ttggtagcttaatttctgggagctcccaggggtccggtttagttgatgctgttggtcttc 951

                                                                        
Query: 235  taatgtggttgccatccctttcagctccttcacttcttcccctaactcttccataaatgc 294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 950  taatgtggttgccatccctttcagctccttcacttcttcccctaactcttccataaatgt 891

                                                                        
Query: 295  tcctgacctcagtccaatgatcagctagctgtcagtatctgcatctgtctcagtcagctg 354
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890  tcctgacctcagtccaatgatcagctagctgtcagtatctgcatctgtctcagtcagctg 831

                                                                        
Query: 355  ctaatagagacagcaatgctaggcaacaaactctgacacaaatactgatgctatgttgtg 414
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830  ctaatagagacagcaatgctaggcaacaaactctgacacaaatactgatgctatgttgtg 771

                                                                        
Query: 415  cttgtagacaggagccatgaaataatttttaaacaaaccatttcaaattgtatctagttt 474
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770  cttgtagacaggagccatgaaataatttttaaacaaaccatttcaaattgtatctagttt 711

                                                                        
Query: 475  ccaagagtatgaagtagtaaaattagagcagacatggcttcaaaggaactctataagcac 534
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710  ccaagagtatgaagtagtaaaattagagcagacatggcttcaaaggaactctataagcac 651

                                                                        
Query: 535  aggagcactaagcaatagcagcagcagca--a----cagcagcagcagcagcagcagcag 588
            ||||||||| |||||||||||||||||||  |    ||||||||||||||||||||||||
Sbjct: 650  aggagcactgagcaatagcagcagcagcagcagcagcagcagcagcagcagcagcagcag 591

                                                                        
Query: 589  catcactctttcagaactagattgttcagagcaccatctcttattctgaaagccatagca 648
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590  catcactctttcagaactagattgttcagagcaccatctcttattctgaaagccatagca 531

                                  
Query: 649  ggcctgagctaatctgtttaaa 670
            ||||||||||||||||||||||
Sbjct: 530  ggcctgagctaatctgtttaaa 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)