NNTTGCTTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCGGATACGC
GGAATTCTCCACTCATTGGCAAACTTATTTTTATTTATAAGATACCTGTA
AACTTGATGTTAAGAATTAGAGATATTGAGGCTTTCCCTAAGGCTCTGAT
GTTCCAGGAAGGAACATAGTTCCTTCTCAAAACCAGGAATATGCCCGGCA
GAGCCAATGATGACCTGCAGCCACATCTTTTGGGGATGTTTCTGCTTTGG
ATCCTGAGAACCCAATCCTACTGTACAGGGATATAGCTAGCATTCTGAAG
GCAGCTGTGTGCTTAGCCTGTAATGCCCCTGAGATATCCTGTGTTCCCTT
CGTGCAACATTGCCTGATTGGTTGGTTTTTTGCTGACTTCATTCCATTAC
ATGATAGTTTCTGCTAACTTCCTCCCATTTCTTGCCTGGAAATAGTATAT
AAGACGTTGTGCTCCTTAATAAACTTGTTTGCATGAGCCATAACTTGAAC
AAGACTTCCAGATCCCAAACATTCTCATCTCCTCTATCTTCTATCCTCTT
TCTATTTCCATCTCTTGGCCATCTCTTACTTGGGATCCCATCACTGCTGA
GGGTCAAATTGGTTTGACAGTTTTGTCACTGAGTTTTCTGACTAAGTCTA
CCATTTTGTAATCAAGAAAGCAAGCATATAGTTTTCATCCCATACTGCAT
CCTCAGACCTTGTCCAATAGTGGCTCATGCT

ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGC
AGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACACTGAGATTCCACTTCACTCCAGTCAGAATGGCAAAG
ATCAAAAACTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGGGG
AACGCTCCTCCATTGTTGGTGGGATTGCAAGCTTTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGTACATAGTACTACTAGAGGATC
CTGCAATACCTCTCCTGGGCATATATCCAATCGGTAAGAAGAACACATGC
TCCACTATGTTCATAGCAGCCTTGTTTATAATAGCCAGAAGCTGGAAAGA
AACCAGACGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTT
ACACAATGGAATACTACTCAGCTATTAAAAAAATGAATTCATGAAATTCC
TAGGCAAATGGATGGACCTGGAGGGTATCATCCTGAGTGAAGTAACCCAA
TCACAAAGGAACTCGCACAATATGTACTCACTGATAAGTGGATATTAGCC
CAGAAACTTAGGATACCCAAGATATAAGATACAGCTTGGCAAACGCATGA
AATTCTAGAAAGACGAGGACCAAGTGTGGACACTTTACCCTTTCTTAGAA
ATGGGAACAAAAACCCCATAGAAGGAGTTTA

Query= MSMg01no477_p23.b1 MSMg01no477_p23.b1 CHROMAT_FILE:
MSMg01no477_p23.b1 PHD_FILE: MSMg01no477_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:36 2005
         (636 letters)



>mm_chr6_35870547_35871579
          Length = 1033

 Score =  998 bits (516), Expect = 0.0
 Identities = 554/572 (96%), Gaps = 10/572 (1%)
 Strand = Plus / Minus

                                                                        
Query: 65   cctaaggctctgatgttccaggaaggaacatagttccttctcaaaaccaggaatatgccc 124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1033 cctaaggctctgatgttccaggaaggaacatagttccttctcaaaaccaggaatatgccc 974

                                                                        
Query: 125  ggcagagccaatgatgacctgcagccacatcttttggggatgtttctgctttggatcctg 184
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 973  ggcagagccaatgatgacctgtagccacatcttttggggatgtttctgctttggatcctg 914

                                                                        
Query: 185  agaacccaatcctactgtacagggatatagctagcattctgaaggcagctgtgtgcttag 244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913  agaacccaatcctactgtacagggatatagctagcattctgaaggcagctgtgtgcttag 854

                                                                        
Query: 245  cctgtaatgcccctgagatatcctgtgttcccttcgtgcaacattgcctgattggttggt 304
            ||||||||||||||||||||       |||||||||||||||||||||||||||||||||
Sbjct: 853  cctgtaatgcccctgagata-------ttcccttcgtgcaacattgcctgattggttggt 801

                                                                        
Query: 305  tttttgctgacttcattccattacatgatagtttctgctaacttcctcccatttcttgcc 364
            || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 800  ttcttgctgacttcattccattacatgatagtttctgctaacgtcctcccatttcttgcc 741

                                                                        
Query: 365  tggaaatagtatataagacgttgtgctccttaataaacttgtttgcatgagccataactt 424
            |||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 740  tggaaatagtatataagac---gtgctccttaataaacttgtttgcatgagccataactt 684

                                                                        
Query: 425  gaacaagacttccagatcccaaacattctcatctcctctatcttctatcctctttctatt 484
            ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 683  gaacaagacttccagataccaaacattctcatcttctctatcttctatcctctttctatt 624

                                                                        
Query: 485  tccatctcttggccatctcttacttgggatcccatcactgctgagggtcaaattggtttg 544
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623  tccatctcttggccatctcttacttgggatcccatcactgctgagggtcaaattggtttg 564

                                                                        
Query: 545  acagttttgtcactgagttttctgactaagtctaccattttgtaatcaagaaagcaagca 604
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563  acagttttgtcactgacttttctgactaagtctaccattttgtaatcaagaaagcaagca 504

                                            
Query: 605  tatagttttcatcccatactgcatcctcagac 636
            ||||||||||||||||||||  ||||||||||
Sbjct: 503  tatagttttcatcccatactatatcctcagac 472


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1033
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1023
Effective search space:   640398
Effective search space used:   640398
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)