BAC Information

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BAC

Clone NameMSMg01-479G01
Chromosome6 (Build37)
Map Location 81,965,506 - 81,966,157
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042991, LOC232143, 1700009C05Rik, AW146020, Mrpl19
Downstream geneTmem166, EG622198, Tacr1, Pole4, LOC100043412, Hk2, EG622318, Sema4f, D6Mm5e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479G01.T7 (MSMg01no479_g01.b1)MSMg01-479G01.TJ (MSMg01no479_g01.g1)
ACCAG560273AG560274
length738746
length of high quality
(start - end)
662 (77 - 738)642 (79 - 720)
definitionCHROMAT_FILE: MSMg01no479_g01.b1 PHD_FILE: MSMg01no479_g01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:21 2005CHROMAT_FILE: MSMg01no479_g01.g1 PHD_FILE: MSMg01no479_g01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATCAGTTTACAAAAATCTGTACAGTTTTTATACTGAAGCTA
ATATTGAGCTGTACTTATATTTCACATCCTTAGCAAAATAATTGCCTGAG
CACATATACTCCACACTTTAGGACAGCCATTTATTCTTCATCCTCATCTT
CCCCCTCTTCATCTTCCCCCTCTTCATCTTCCTCCTCTTCTTCTTCCTCC
TCTTCATCTTCCTCCTCTTCATCTTCCTCTTCTTCTTCCTCTTCTTCTTC
ATCTTCTGGTTCCTTCTTCTTCTTTGAGCCTGTTGGCCTATCAGAACCCT
TCTTTCCTGCTTCACTTTTGCCCTTGGCACGGAATGCAGCAATATCCTTT
TCATACTTCTCCTTTGGTTTAGCTGCTTTCTGCTCATATGGTTGTTTATC
TTTGGCAGATTGTTCAGACCACATCTCACCCAGTTTCTTCGAAGTATCTC
CAATAGACAAGCCAGGGTGATCAATTTTAATCTCTGGGCGATTTTCAGAG
CAAAACAGGGAGAAGGCAGACGGTGGTCTCTTCGGAGCATTTGGATCTTT
TTTCTTTCCTTTCTTATCACCTTTGGAAGGAACATAGTTCTTCATCTCCC
TGTCATAACGTGCTTTGTCGCTCTTGGCCAAATCTTCAAACTTCGACTTT
TCCTTTGCAGACATAGTGTTCCATCTCTCGGATCACTT
NTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGCTGACCTCGAACTCACAGA
GATCTATCTGTCTCTGCCTCCTGAACACTAAGATTAAAGGCATGTGCCAC
CATGTCTAATAGAGATAAAAGTTTCTTAAAATAAAATGGTGGAGGCTGGA
GAGGTGGCAGAGCAGTTAAAGGCACTCACTGTTCTTCCAGTAGAGCTAAG
TTTGGATCCCAGAACCCACACTAGATGGTTCTTAGCCACCTGTAACTCCA
GCTTCTTTAAACAGAGCACTCTAGATGTATAGGCAGGCAGTTCTCTGTGA
GTTTGAGGACAACCTGTTCCATGTTGTGAGGTCTAGGACAGGGTTACATA
GAATAATAAATGAGAGCATCATATGCCCTGAAGCTGTTATTATAAGTGGT
TATATAAGTGAGGTGCTTGATGTGAGTGTGGGGAACTCATGTCCTCCAGG
AGAGCAACGAGTGTTCTTCTTATGGCCCTCAACTTTGTGCATCTGTGTGT
GTGTGTGTGTGTGTCTGTCTGTCTGTCTGTCTGTCTGTCGTGGGAAGTTA
CAGCAGCAGGAATGAGAGGCACTTGGTCACATTACATCTGAGGTCAGCAT
GCAGATATGAGGTGGGGGAAGACAGAGAGACAGAGATAGCCTAATGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGATAGAGAGAGAGAGAGAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_g01.g1 MSMg01no479_g01.g1 CHROMAT_FILE:
MSMg01no479_g01.g1 PHD_FILE: MSMg01no479_g01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:21 2005
         (642 letters)



>mm_chr6_81965168_81966209
          Length = 1042

 Score = 1176 bits (608), Expect = 0.0
 Identities = 637/654 (97%), Gaps = 14/654 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggctgacctcgaactcacagagatctatctgtctctgcctcctgaacactaagattaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 aggctgacctcgaactcacagagatctatctgtctctgcctcctgaacactaagattaaa 931

                                                                       
Query: 61  ggcatgtgccaccatgtctaatagagataaaagtttcttaaaataaaatggtggaggctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 ggcatgtgccaccatgtctaatagagataaaagtttcttaaaataaaatggtggaggctg 871

                                                                       
Query: 121 gagaggtggcagagcagttaaaggcactcactgttcttccagtagagctaagtttggatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 gagaggtggcagagcagttaaaggcactcactgttcttccagtagagctaagtttggatc 811

                                                                       
Query: 181 ccagaacccacactagatggttcttagccacctgtaactccagcttctttaaacagagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 ccagaacccacactagatggttcttagccacctgtaactccagcttctttaaacagagca 751

                                                                       
Query: 241 ctctagatgtataggcaggcagttctctgtgagtttgaggacaacctgttccatgttgtg 300
           ||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 ctctagaggcagaggcaggcagttctctgtgagtttgaggacaacctgttccatgttgtg 691

                                                                       
Query: 301 aggtctaggacagggttacatagaataataaatgagagcatcatatgccctgaagctgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 aggtctaggacagggttacatagaataataaatgagagcatcatatgccctgaagctgtt 631

                                                                       
Query: 361 attataagtggttatataagtgaggtgcttgatgtgagtgtggggaactcatgtcctcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 attataagtggttatataagtgaggtgcttgatgtgagtgtggggaactcatgtcctcca 571

                                                                       
Query: 421 ggagagcaacgagtgttcttcttatggccctcaactttgtgcatctgtgtgtgtgtgtgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ggagagcaacgagtgttcttcttatggccctcaactttgtgcatctgtgtgtgtgtgtgt 511

                                                                       
Query: 481 g----------tg--tgtctgtctgtctgtctgtctgtctgtcgtgggaagttacagcag 528
           |          ||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtcgtgggaagttacagcag 451

                                                                       
Query: 529 caggaatgagaggcacttggtcacattacatctgaggtcagcatgcagatatgaggtggg 588
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 caggaatgagaggcacttggtcacattacatctgaggtcagcatgcagatatgaggtggg 391

                                                                 
Query: 589 ggaagacagagagacagagatagcctaatgagagagagagagagagagagagag 642
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 390 ggaagacagagagacagagatagccta--gagagagagagagagagagagagag 339


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)