Query= MSMg01no479_m05.b1 MSMg01no479_m05.b1 CHROMAT_FILE:
MSMg01no479_m05.b1 PHD_FILE: MSMg01no479_m05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:52 2005
(706 letters)
>mm_chr6_12521913_12523019
Length = 1107
Score = 1280 bits (662), Expect = 0.0
Identities = 692/702 (98%), Gaps = 1/702 (0%)
Strand = Plus / Minus
Query: 5 gaattcagttt-gtacctcaaaatacaatgaataaatcttatacttgttcattttctttt 63
||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 gaattcagtttggaaactcaaaatacaatgaataaatcttatacttgttcattttctttt 847
Query: 64 tataagtaaagtttgtcctatattgcaggctctatggataaggtagggaaataagtttcc 123
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 846 tataagtaaagtttgtcctatattgcaggctctatggataaggtagagaaataagtttcc 787
Query: 124 tcatgaatagaactcctgtaattcattatgtcatgaatctgcaagaatccacaagatcag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tcatgaatagaactcctgtaattcattatgtcatgaatctgcaagaatccacaagatcag 727
Query: 184 agttttcatagtataaaatgatgaaaccttggttatctcagtaataaaacattcaacctt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 agttttcatagtataaaatgatgaaaccttggttatctcagtaataaaacattcaacctt 667
Query: 244 tggaaaaatgaggcgagccctctaagcagtttatatttcctttgagagcaatgaatttca 303
||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 666 tggaaaagtgaggcgagccctctaagcagttgatatttcctttgaaagcaatgaatttca 607
Query: 304 cagcttcgaagtagtgtttgtcacatagaaaagccaagatgttttcagatggggagcaat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 cagcttcgaagtagtgtttgtcacatagaaaagccaagatgttttcagatggggagcaat 547
Query: 364 tatggaaatgtaaaacactctcaggcataacatgtgacactgaagaaaatgccacagaaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tatggaaatgtaaaacactctcaggcataacatgtgacactgaagaaaatgccacagaaa 487
Query: 424 taatgagtaggccattagcaccgtcagagcaaggaggggagataatttgaattccatcac 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 486 taatgagtaggccattagcaccgtcagagcaaggaggggagataatttgaattccatcgc 427
Query: 484 ttcttatagtcatatggtcacaagcatattagcaagtgacaagtcgaaaataaagtatat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ttcttatagtcatatggtcacaagcatattagcaagtgacaagtcgaaaataaagtatat 367
Query: 544 gtgatagacacaaatcttccctggtgacaaactatgagaaaaggaagtaagccattagaa 603
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gtgatagacacaaatctttcctggtgacaaactatgagaaaaggaagtaagccattagat 307
Query: 604 aaacaatgttaatttttgctaagttactattctcaaaagtaggaagtggccctgtctaaa 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aaacaatgttaatttttgctaagttactattctcaaaagtaggaagtggccctgtctaaa 247
Query: 664 aggcactagccatgttttacattttaattacctaataactaa 705
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aggcactagccatgttttacattttaattacctaataactaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1107
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1097
Effective search space: 763512
Effective search space used: 763512
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no479_m05.g1 MSMg01no479_m05.g1 CHROMAT_FILE:
MSMg01no479_m05.g1 PHD_FILE: MSMg01no479_m05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:52 2005
(636 letters)
>mm_chr6_12285003_12286036
Length = 1034
Score = 1172 bits (606), Expect = 0.0
Identities = 628/636 (98%), Gaps = 2/636 (0%)
Strand = Plus / Plus
Query: 1 atctttcttaaaagaaatgtgggtcctcaggcgatataaatgtttttatataatttgctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctttcttaaaagaaatgtgggtcctcaggcgatataaatgtttttatataatttgctt 260
Query: 61 atgaagaatttctattctcaggtttatctcatcaactctgctgtaacttatttatttatt 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 atgaagaatttctattctcaggtttatctcattaactctgctgtaacttatttatttatt 320
Query: 121 tattatttatttatgtgtatggcctctcataatgtatcattttatttgtattttgatcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattatttatttatgtgtatggcctctcataatgtatcattttatttgtattttgatcct 380
Query: 181 gtcattgtgatttacatgttacagttttgaagtatatataagaaagaatttcaagttcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcattgtgatttacatgttacagttttgaagtatatataagaaagaatttcaagttcac 440
Query: 241 aggtgatatatttcattccaacatctaaagtgaaatcaaaggtatgaggaagcattaaaa 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggtgatatattccattccaacatctaaagtgaaatcaaaggtatgaggaagcattaaaa 500
Query: 301 taaaaagtattaatattatagcagagaataacaatttttattggtaattctcagaactgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 --aaaagtattaatattatagcagagaataacaatttttattggtaattctcagaactgc 558
Query: 361 cattcctttttgctttctatgaaaaagtaatttaaatttttagtatctgtacaatatgta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cattcctttttgctttctatgaaaaagtaatttaaatttttagtatctgtacaatatgta 618
Query: 421 aatgtgctgttatgagaatggatatagactatgaaattagacaagagaccatgggaagga 480
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 619 aatgtgctgttatgagaatggatatagactatgaaattagacgagagaccatgggaagga 678
Query: 481 aacaaggtatattgaggaaggagagtgatgggaatgttagtggatttaaccctaattttc 540
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 679 aacacggtatattgaggaaggagagtgacgggaatgttagtggatttaaccctaattttc 738
Query: 541 ctctttgtagggcactaatgacacatttctttgtggccattagagaatcagcaagagcta 600
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 739 ctctttgtagggcactaatgacacatttctttgtggccattagagaagcagcaagagcta 798
Query: 601 cctactgctgctgaactgaatacagggtttgcacag 636
||||||||||||||||||||||||||||||||||||
Sbjct: 799 cctactgctgctgaactgaatacagggtttgcacag 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1034
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1024
Effective search space: 641024
Effective search space used: 641024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
