Query= MSMg01no480_m01.b1 MSMg01no480_m01.b1 CHROMAT_FILE:
MSMg01no480_m01.b1 PHD_FILE: MSMg01no480_m01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:09 2005
(625 letters)
>mm_chr6_53062912_53063936
Length = 1025
Score = 1141 bits (590), Expect = 0.0
Identities = 611/618 (98%)
Strand = Plus / Plus
Query: 6 attctttttattttccggtgttggaggttaaccacgctaggctctaccgttgacttatat 65
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 attctttttattttgtggtgttggaggttaaccacgctaggctctaccgttgacttatat 265
Query: 66 atcctggcaaacctttactcctttgcagactaccccagctcaatgaaggggaataccttt 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 atcctggcaaacctttactcctttgcagactaccccagctcaatgaaggggaataccttt 325
Query: 126 ctttcaggagccaaggtcagagcatgctccatttgttcttctcctctcctcatactccag 185
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 326 ctttcaggagccaaggtcagagcacgctccatttgttcttctcctctcctcatactccag 385
Query: 186 ttacatcagctatcttgctgctttcccacaagagaaagtcagaaaacaaacacttcccac 245
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 386 ttacatcagctatcttgctgctttcccacaagagaaagtcagaaaacgaacacttcccac 445
Query: 246 ctgctccatcacctccatcttggcccaagcagctactgttgccacagagattagtacagt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ctgctccatcacctccatcttggcccaagcagctactgttgccacagagattagtacagt 505
Query: 306 acagtcttttcatggtgacctcatccccttacaattaattttctacttaacagctacagt 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 acagtcttttcatggtgacctcatccccttacaattaattttctacttaacagctacagt 565
Query: 366 gagccttttagtctacaaattacattctaaagtgtgggctttagaaccaatgactacctt 425
|| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gaaccttttagtccacacattacattctaaagtgtgggctttagaaccaatgactacctt 625
Query: 426 cacactgggagaaaaagccagtgcccattcgcttctccctgagttgcagcctcatctaga 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cacactgggagaaaaagccagtgcccattcgcttctccctgagttgcagcctcatctaga 685
Query: 486 taatgatgccagggtttgttttttatcaccagtgctgacttcatcctatctagtgagttc 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 taatgatgccagggtttgttttttatcaccagtgctgacttcatcctatctagtgagttc 745
Query: 546 ttttccactagctaatcatcttaaagaaaactaaacatataaaagattaagtgagagcat 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ttttccactagctaatcatcttaaagaaaactaaacatataaaagattaagtgagagcat 805
Query: 606 ggtagtagcatttttgtc 623
||||||||||||||||||
Sbjct: 806 ggtagtagcatttttgtc 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no480_m01.g1 MSMg01no480_m01.g1 CHROMAT_FILE:
MSMg01no480_m01.g1 PHD_FILE: MSMg01no480_m01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:09 2005
(561 letters)
>mm_chr6_53082217_53083177
Length = 961
Score = 832 bits (430), Expect = 0.0
Identities = 467/484 (96%), Gaps = 8/484 (1%)
Strand = Plus / Minus
Query: 78 ttgctttccctttaagcctaacaagataactgtgagtaagtgtgcttgctacacaatctg 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 ttgctttccctttaagcctaacaagataactgtgagtaagtgtgcttgctacacaatctg 902
Query: 138 acaatatgactttgattccagatcccacagtgaaaagagagaactgactcctggagattg 197
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 901 acaatatgactttgattccagatcccacaatgaaaagagagaactgactcctggagattg 842
Query: 198 ccctttgacctctgcatgcattgtttggcagttatgcatcctcatttacacacacatatc 257
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 841 ccctttgacctctgcatgcattgtttggcagtcatgcatcctcatttacacacacatatc 782
Query: 258 tcacacacacacacacacacacacacactaatagtaatgaataacaatacactttaatgt 317
| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 t--------cacacacacacacacacactaatagtaatgaataacaatacactttaatgt 730
Query: 318 aataataacaaatatgacttgatgcagtggtgaactgttcaatgattcctttaggagatg 377
|||||||||||||||| ||||||||||||||||||||||| | ||| |||||||||||||
Sbjct: 729 aataataacaaatatggcttgatgcagtggtgaactgttctacgatccctttaggagatg 670
Query: 378 aacagtaatccacccttttaattccttttgttctgacaaaggaaaaagcagatgccagac 437
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 669 aacagtaatccacccttttaatttcttttgttctgacaaaggaaaaagcagatgccagac 610
Query: 438 tgcaatagtaaacgggggtgggaacctcggcagtgcagcccagcatcccactcaagtgtt 497
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 609 tgcaatagtaaactggggtgggaacctcagcagtgcagcccagcatcccactcaagtgtt 550
Query: 498 caaggcagcactgggcaaaaattcacagtacagctattactgttgtggggtttgtggccc 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 caaggcagcactgggcaaaaattcacagtacagctattactgttgtggggtttgtggccc 490
Query: 558 tcca 561
||||
Sbjct: 489 tcca 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
