BAC Information

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BAC

Clone NameMSMg01-480N06
Chromosome6 (Build37)
Map Location 56,748,350 - 56,748,929
singlet/doubletsinglet
Overlap genenone
Upstream geneCcdc129, Gsbs, LOC100041357, Pde1c, EG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2
Downstream geneFkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5, Pigy, Lancl2, AW146242
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480N06.T7 (MSMg01no480_n06.b1)MSMg01-480N06.TJ (MSMg01no480_n06.g1)
ACCAG561376AG561377
length731735
length of high quality
(start - end)		585 (73 - 657)656 (80 - 735)
definitionCHROMAT_FILE: MSMg01no480_n06.b1 PHD_FILE: MSMg01no480_n06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:15 2005CHROMAT_FILE: MSMg01no480_n06.g1 PHD_FILE: MSMg01no480_n06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGG
AATTCCTAAATTACCCAAAGTTGAAGAAGGCTAATTAAAACTTCACTGAC
TGCGGAGAGTTTAGAATGTAGCAGGTCTAGAGTCTGATGACAGTTTCTCT
TGTGCTATCTTTAGCTCCCTAAAAAGTAGTTGCTTGCCTACTTCTTTGAC
TGACCTAACTTCTGATAGATTAAAACCTTGGGAATGTATTGACTTAATAA
AAATCCTGTTAACAACAATATGAACTAACAAGTACCTCCTGAGCTCGTGT
CTCTAGCTGCATATGTATTTTATGACCTAGTTGGCCATCACTAGGAGGAG
AGGCCCTTGGTCTTGCAAAGATTATATGCCATACAGGGGAATGCCAGGGC
CAGGAAGCAGGAGTGGGTGGGTTGGGGAGCAGAGATGAGGGAGGGCATAG
GGGACTTTTGGGATAGCATTTGAAATGTAAATGAAGAAAATATCTAATAA
AAATTGTCTAAAAATTTAAAAATAAATGAAAATAAAAATCCTATTATCTG
CTCATCAAAGGACTAAGAATCCCATCAGATAGCATCTGAGGCCAATCTGC
CTGGCTGTAACCCACTTCCCTGAGGTTCCTTTTCATCAATGGAACTTGTA
AATGCTTGATTTAAGACTTTCTTCATTCTGCTACTATACAACTTCAGAAA
ACTGCTTCTATGGGGGAACATAGAGCGCGGA

ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTAAACATGGTGGG
TGAACTATAGAAGGTGCAAGAAAAATGCCATATTCACGCAATCAAGATGA
AGAGCAGTCCCATTAACTACAAAGAAGTTTCTTGTGCTATGTGCTAGGTG
TTCACAACGACGTCGGTCAACTAGATTTTCTTTGTATTATTTCAGGGAAG
CAAAATTAGAGTGGATAGATACATTGTATACCAGCACGGTTAACTATATT
TTCTTTGTATTATTACAAGACAGCAAAATGGAGTGGATAGATACATTGTA
TTTGAGAGCAGACAAGATTTTTCTTGTATCCTTACAGGGAAGCAAGATAG
ATGCATTGCATTGTAATGCTCTGTAATGCATTCTGAGGGCCTGTGAACCC
CCTCTACCAAACCAGCACTTTTAAAGAGTCTGGTGTCGTTCATGTGCTCC
TGTTAAAATTTGAACTCACTATTTAACGAAGGACAGCCGGGAATTCCTGA
TATCCTTTCTCTAGCCTCCTGCCATCTGGGATTAGAGGTGTCTGTCCCTT
TGCCTAATGCTTTATATGTGGCCATTCTTATTTTCAAGACTGGACTTGTT
CTAACAGTTGAAGTTAGGAAGTAGGCAATTCTGAACGTTTTTTGTTTCGT
TTTCGTTACATGTATCTTTAGGCAAATCTATAACATTTTTGCTTGCCAAC
AAGTCTCGCAGACCACAGGCACTTGCTACTTCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_n06.g1 MSMg01no480_n06.g1 CHROMAT_FILE:
MSMg01no480_n06.g1 PHD_FILE: MSMg01no480_n06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:15 2005
         (656 letters)



>mm_chr6_56748350_56749405
          Length = 1056

 Score = 1054 bits (545), Expect = 0.0
 Identities = 572/581 (98%), Gaps = 2/581 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atattcacgcaatcaagatgaagagcagtcccattaactacaaagaagtttcttgtgcta 60
           ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 580 atattcacgcagtcaagatgaagagcagtcccattaactacaaagaagttccttgtgcta 521

                                                                       
Query: 61  tgtgctaggtgttcacaacgacgtcggtcaactagattttctttgtattatttcagggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tgtgctaggtgttcacaacgacgtcggtcaactagattttctttgtattatttcagggaa 461

                                                                       
Query: 121 gcaaaattagagtggatagatacattgtataccagcacggttaactatattttctttgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gcaaaattagagtggatagatacattgtataccagcacggttaactatattttctttgta 401

                                                                       
Query: 181 ttattacaagacagcaaaatggagtggatagatacattgtatttgagagcagacaagatt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 400 ttattacaagacagcaaaatggagtggatagatacattgtatttgagagcagacaaga-t 342

                                                                       
Query: 241 tttc-ttgtatccttacagggaagcaagatagatgcattgcattgtaatgctctgtaatg 299
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tttctttgtatccttacagggaagcaagatagatgcattgcattgtaatgctctgtaatg 282

                                                                       
Query: 300 cattctgagggcctgtgaaccccctctaccaaaccagcacttttaaagagtctggtgtcg 359
           |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 281 cattctgagggcctgttaaccccctctaccaaaccagcacttttaaatagtctggtgtcg 222

                                                                       
Query: 360 ttcatgtgctcctgttaaaatttgaactcactatttaacgaaggacagccgggaattcct 419
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 221 ttcatgtgctcctgttaaaatttgaactcactatttagcgaaggacagccgggaattcct 162

                                                                       
Query: 420 gatatcctttctctagcctcctgccatctgggattagaggtgtctgtccctttgcctaat 479
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 161 gatatcctttctctagcctcctgccatctgggattagaggtgtctgtctctttgcctaat 102

                                                                       
Query: 480 gctttatatgtggccattcttattttcaagactggacttgttctaacagttgaagttagg 539
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 101 gctttatatgtggccattcttattttcaaaactggacttgttctaacagttgaagttagg 42

                                                    
Query: 540 aagtaggcaattctgaacgttttttgtttcgttttcgttac 580
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 41  aagtaggcaattctgaacgttttttgtttcgttttcgttac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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